TaqMan Search (original) (raw)
Enter target information
Supported Search Terms:
Assay ID : e.g, "Hs00153283_m1"
Entrez Gene ID: e.g., "10332"
Gene Symbol: e.g., "CALCA"
RefSeq Accession #: e.g., "NM_005795"
GenBank RNA: e.g., "AI219647"
Protein ID: e.g., "Q8IWW8"
RNAdb ID: e.g., "LIT1011"
RNAdb Gene Symbol: e.g., "Jpx"
MicroArray Probe ID*: e.g., "208478_s_at"
*If you enter a microarray probe ID, your search will return the 3' most assay(s) for the corresponding gene
Supported Search Terms:
Assay ID: e.g. "Hs00326060_CE"
SNP ID: e.g. "rs12096805"
Entrez Gene ID: e.g. "6262
Gene Symbol: e.g. "JAK2"
Gene Name: e.g. "Janus kinase 2"
RefSeq Accession #: e.g. "NM_007294"
GenBank mRNA: e.g. CR536579.1"
Protein ID: e.g. "CAA66975.1"
Cosmic ID: e.g. "121007"
Sequence
Enter / Upload Multiple Targets
Include 10kb Flanking Region
Enter Single Sequence
ONLY the species listed below are available for search by sequence. A single species from the list must be selected, and that species must match the species of the input sequence:
H. sapiens (Human)
M. musculus (Mouse)
R. norvegicus (Rat)
A. thaliana (Arabidopsis)
B. taurus (Cattle)
C. elegans (Nematode)
C. familiaris (Canine)
C. hircus (Goat)
C. griseus (Chinese hamster)
D. melanogaster (Fruit fly)
D. rerio (Zebrafish)
E. caballus (Horse)
G. gallus (Chicken)
G. max (Soybean)
H. glaber (Mole-rat)
M. mulatta (Rhesus)
M. fascicularis (Cyno)
O. aries (Sheep)
O. cuniculus (Rabbit)
O. sativa (Rice)
S. pombe (Fission yeast)
S. scrofa (Pig)
Z. mays (Maize)
Marker and Reporter sequences(e.g. GFP, FLAG, etc)
Select a single species to search by sequence
Genome Version : Build GRCh38 for [Hs] Human
Genome Version : Build GRCm38 for [Mm] Mouse
What chromosome position are you interested in?
Genome Version :
GRCh38 (hg38) GRCh37 (hg19)
for [Hs] Human
Select a single species to search by location
| Number | Position/Start | Position/Stop |
|---|---|---|
| Based on NCBI Reference Sequence: NC_012920.1 | Based on NCBI Reference Sequence: NC_012920.1 |
Multiple chromosome co-ordinate search limit is 12.
Whole Mitochondrial Genome
Upload your file (.vcf , .bed only)
Any software that reports genomic coordinates must include the genome reference version in the file header. To be compatible with Thermo Fisher Scientific software and content, the version number must be either GRCh38.p2 or hg19.
Example for VCF files:
**##reference=**GRCh38.p2
**##contig= <**ID=7,length=159345973,assembly=GRCh38.p2>
Example for BED files:
track name="CHP2_designed"
description="Amplicon_Insert_CGP2"
db=hg38
reference=GRCh38.p2
masked_reference=GRCh38.p2.mask1
Supported Keywords:
Supported Search Terms:
You may conduct a batch search using the following types of search terms:
Assay ID: e.g, "Hs00153283_m1"
Entrez Gene ID: e.g., "10332"
Gene Symbol: e.g., "CALCA"
RefSeq Accession #: e.g., "NM_005795"
GenBank RNA: e.g., "AI219647"
Protein ID: e.g., "Q8IWW8"
RNAdb ID: e.g., "LIT1011"
RNAdb Gene Symbol: e.g., "Jpx"
MicroArray Probe ID*: e.g., "208478_s_at"
*If you enter a microarray probe ID, your search will return the 3' most assay(s) for the corresponding gene
Assay IDs
Entrez Gene IDs
Gene Symbols
RefSeq Accession numbers
GenBank mRNA Accession numbers
Protein IDs
RNAdb IDs and Gene Symbols
Array Probe IDs
Supported Keywords:
siRNA IDs
Entrez Gene IDs
Gene Symbols
RefSeq Accession numbers
GenBank mRNA Accession numbers
Protein IDs
RNAdb IDs and Gene Symbols
Supported Keywords:
Gene Symbol
RefSeq mRNA Accession
Entrez Gene ID
UniGene ID
Gene Alias
GenBank mRNA Accession
siRNA ID
GenBank Protein ID
Supported Keywords:
Assay IDs
Gene Symbols
RefSeq Accession numbers
DGV Accession numbers
Supported Keywords:
Assay IDs
RS #s
Gene Symbols
RefSeq Accession numbers
Celera hCV numbers
Supported Keywords:
Assay IDs
Assay Names
Target Sequences (mature sequences)
miRBase IDs
miRBase Accession Numbers
Stem-loop IDs
Stem-loop Accession Numbers
Supported Keywords:
Gene symbol (e.g. KRAS)
COSMIC ID (e.g. 516)
Assay Name (e.g. KRAS_rf)
Assay ID (e.g. Hs00000174_rf)
Nucleotide Mutation (c.2582T>A)
Amino Acid Change (p.L861Q)
Supported Keywords:
Assay IDs
Entrez Gene IDs
Gene Symbols
Gene Aliases
COSMIC IDs
SNP IDs
Nucleotide Mutations (e.g. c.2582T>A)
Amino Acid Changes (e.g. p.L861Q)
RefSeq Accessions
Supported Keywords:
Gene symbol
Assay ID
Plate SKU
Supported Keywords:
miRBase ID
Assay ID
Plate SKU
Supported Keywords:
Gene Name
Gene ID
Assay ID
Supported Keywords:
sgRNA IDs
Entrez Gene IDs
Gene Symbols
Gene Name
Assay IDs
Entrez Gene IDs
Gene Symbols
RefSeq Accession numbers
GenBank mRNA Accession numbers
Protein IDs
Supported Keywords:
Assay IDs
Assay Names
Target Sequences (mature sequences)
miRBase IDs
miRBase Accession Numbers
Stem-loop IDs
Stem-loop Accession Numbers
OR
The following file types are supported: ANSI files with extension .txt, .txtN (where N is a number) or .vcf containing either a list of keywords, the exported results from a previous assay search, or VCF-compliant data.
You must enter at least one sequence before continuing
Sequence Name: Your sequence names must be unique.
Sequence Error: Sequences must be Entered and composed solely of the nucleotides A, C, G, T.
Sequence Error: Sequences must be Entered and composed solely of the nucleotides A, C, G, and U.
Sequence Name must Be Entered.
You must enter at least one sequence before continuing
Sequence Name: Your sequence names must be unique.
Sequence Error: Sequences must be Entered and composed solely of the nucleotides A, C, G, T.
Sequence Error: Sequences must be Entered and composed solely of the nucleotides A, C, G, and U.
Sequence Name must Be Entered.
You must enter at least one sequence before continuing
Sequence Name: Your sequence names must be unique.
Sequence Error: Sequences must be Entered and composed solely of the nucleotides A, C, G, T.
Sequence Error: Sequences must be Entered and composed solely of the nucleotides A, C, G, and U.
Sequence Name must Be Entered.
| Name Name The Sequence name must be Entered, upto 30 characters in length. | Sequence Sequence: Please enter your sequence in the 5' to 3' direction. Sequences must be composed solely of the nucleotides A, C, G, T. Please convert U's to T's and remove any spaces, tabs, or line breaks. Sequence: Sequences must be composed solely of the nucleotides A, C, G, and U. | X Remove All |
|---|---|---|
| X Remove | ||
| X Remove | ||
| X Remove |
OR
File types that are supported include FASTA files with extension .txt
Please Upload Valid Text File.
Error - Invalid Header in Filebuilder file. .
Host server : magellan-search-green-7d94cb4b65-4lm45:80/100.66.75.98:80.
git-commit: c9e08c96761173abe34e68f880379696776a4827
git-url: https://github.com/thermofisher/magellan-search
git-branch: release/2.44.1-2026.02.97.1.0