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2024

Khanal, Rajendra; Heinen, Natalie; Bogomolova, Alexandra; Meister, Toni L; Herrmann, Simon T; Westhoven, Saskia; Nocke, Maximilian K; Todt, Daniel; Jockenhövel, Freya; Klein, Isabel M; Hartmann, Laura; Vondran, Florian W R; Steinmann, Eike; Zimmer, Gert; Ott, Michael; Brown, Richard J P; Sharma, Amar Deep; Pfaender, Stephanie (2024). MicroRNAs modulate SARS-CoV-2 infection of primary human hepatocytes by regulating the entry factors ACE2 and TMPRSS2. (In Press). Liver international Wiley10.1111/liv.16079

Avanthay, Robin; Garcia Nicolas, Obdulio; Ruggli, Nicolas; Grau Roma, Llorenç; Párraga-Ros, Ester; Summerfield, Artur; Zimmer, Gert (2024). Evaluation of a novel intramuscular prime/intranasal boost vaccination strategy against influenza in the pig model. PLoS pathogens, 20(8) Public Library of Science10.1371/journal.ppat.1012393

Graaf-Rau, Annika; Schmies, Kathrin; Breithaupt, Angele; Ciminski, Kevin; Zimmer, Gert; Summerfield, Artur; Sehl-Ewert, Julia; Lillie-Jaschniski, Kathrin; Helmer, Carina; Bielenberg, Wiebke; Grosse Beilage, Elisabeth; Schwemmle, Martin; Beer, Martin; Harder, Timm (2024). Reassortment incompetent live attenuated and replicon influenza vaccines provide improved protection against influenza in piglets. npj vaccines, 9(127) Nature Publishing Group10.1038/s41541-024-00916-x

Leborgne, Nathan GF; Devisme, Christelle; Kozarac, Nedim; Berenguer Veiga, Inês; Ebert, Nadine; Godel, Aurélie; Grau Roma, Llorenç; Scherer, Melanie; Plattet, Philippe; Thiel, Volker; Zimmer, Gert; Taddeo, Adriano; Benarafa, Charaf (2024). Neutrophil proteases are protective against SARS-CoV-2 by degrading the spike protein and dampening virus-mediated inflammation. JCI insight, 9(7) JCI Insight10.1172/jci.insight.174133

2023

Thompson, Danielle; Cismaru, Christiana Victoria; Rougier, Jean-Sébastien; Schwemmle, Martin; Zimmer, Gert (2023). The M2 proteins of bat influenza A viruses reveal atypical features compared to conventional M2 proteins. Journal of virology, 97(8), e0038823. American Society for Microbiology10.1128/jvi.00388-23

Avanthay, Robin; Garcia-Nicolas, Obdulio; Zimmer, Gert; Summerfield, Artur (2023). NS1 and PA-X of H1N1/09 influenza virus act in a concerted manner to manipulate the innate immune response of porcine respiratory epithelial cells. Frontiers in cellular and infection microbiology, 13(1222805), p. 1222805. Frontiers10.3389/fcimb.2023.1222805

García-Nicolás, O; Godel, A; Zimmer, G; Summerfield, A (2023). Macrophage phagocytosis of SARS-CoV-2-infected cells mediates potent plasmacytoid dendritic cell activation. Cellular & molecular immunology, 20(7), pp. 835-849. Nature Publ. Group10.1038/s41423-023-01039-4

Brigger, Daniel; Guntern, Pascal; Jonsdottir, Hulda R; Pennington, Luke F; Weber, Benjamin; Taddeo, Adriano; Zimmer, Gert; Leborgne, Nathan G F; Benarafa, Charaf; Jardetzky, Theodore S; Eggel, Alexander (2023). Sex-specific differences in immune response to SARS-CoV-2 vaccination vanish with age. Allergy, 78(6), pp. 1683-1686. Wiley10.1111/all.15652

2022

Aicher, Sophie-Marie; Streicher, Felix; Chazal, Maxime; Planas, Delphine; Luo, Dongsheng; Buchrieser, Julian; Nemcova, Monika; Seidlova, Veronika; Zukal, Jan; Serra-Cobo, Jordi; Pontier, Dominique; Pain, Bertrand; Zimmer, Gert; Schwartz, Olivier; Roingeard, Philippe; Pikula, Jiri; Dacheux, Laurent; Jouvenet, Nolwenn (2022). Species-Specific Molecular Barriers to SARS-CoV-2 Replication in Bat Cells. Journal of virology, 96(14), e0060822. American Society for Microbiology10.1128/jvi.00608-22

Taddeo, Adriano; Berenguer Veiga, Inês; Devisme, Christelle; Boss, Renate; Plattet, Philippe; Weigang, Sebastian; Kochs, Georg; Thiel, Volker; Benarafa, Charaf; Zimmer, Gert (2022). Optimized intramuscular immunization with VSV-vectored spike protein triggers a superior immune response to SARS-CoV-2. NPJ vaccines, 7(1), p. 82. Springer Nature10.1038/s41541-022-00508-7

Callegari, Ilaria; Schneider, Mika; Berloffa, Giuliano; Mühlethaler, Tobias; Holdermann, Sebastian; Galli, Edoardo; Roloff, Tim; Boss, Renate; Infanti, Laura; Khanna, Nina; Egli, Adrian; Buser, Andreas; Zimmer, Gert; Derfuss, Tobias; Sanderson, Nicholas S R (2022). Potent neutralization by monoclonal human IgM against SARS-CoV-2 is impaired by class switch. EMBO reports, 23(7), e53956. EMBO press10.15252/embr.202153956

Mac Kain, Alice; Maarifi, Ghizlane; Aicher, Sophie-Marie; Arhel, Nathalie; Baidaliuk, Artem; Munier, Sandie; Donati, Flora; Vallet, Thomas; Tran, Quang Dinh; Hardy, Alexandra; Chazal, Maxime; Porrot, Françoise; OhAinle, Molly; Carlson-Stevermer, Jared; Oki, Jennifer; Holden, Kevin; Zimmer, Gert; Simon-Lorière, Etienne; Bruel, Timothée; Schwartz, Olivier; ... (2022). Identification of DAXX as a restriction factor of SARS-CoV-2 through a CRISPR/Cas9 screen. Nature Communications, 13(1), p. 2442. Springer Nature10.1038/s41467-022-30134-9

Walter, Justin D; Scherer, Melanie; Hutter, Cedric A J; Garaeva, Alisa A; Zimmermann, Iwan; Wyss, Marianne; Rheinberger, Jan; Ruedin, Yelena; Earp, Jennifer C; Egloff, Pascal; Sorgenfrei, Michèle; Hürlimann, Lea M; Gonda, Imre; Meier, Gianmarco; Remm, Sille; Thavarasah, Sujani; van Geest, Geert; Bruggmann, Rémy; Zimmer, Gert; Slotboom, Dirk J; ... (2022). Biparatopic sybodies neutralize SARS-CoV-2 variants of concern and mitigate drug resistance. EMBO reports, 23(4), e54199. EMBO press10.15252/embr.202154199

Heinen, Natalie; Marheinecke, Corinna Sophie; Bessen, Clara; Blazquez-Navarro, Arturo; Roch, Toralf; Stervbo, Ulrik; Anft, Moritz; Plaza-Sirvent, Carlos; Busse, Sandra; Klöhn, Mara; Schrader, Jil; Vidal Blanco, Elena; Urlaub, Doris; Watzl, Carsten; Hoffmann, Markus; Pöhlmann, Stefan; Tenbusch, Matthias; Steinmann, Eike; Todt, Daniel; Hagenbeck, Carsten; ... (2022). In-depth analysis of T cell immunity and antibody responses in heterologous prime-boost-boost vaccine regimens against SARS-CoV-2 and Omicron variant. Frontiers in immunology, 13, p. 1062210. Frontiers Research Foundation10.3389/fimmu.2022.1062210

2021

Kratzel, Annika; Kelly, Jenna N; V'kovski, Philip; Portmann, Jasmine; Brüggemann, Yannick; Todt, Daniel; Ebert, Nadine; Shrestha, Neeta; Plattet, Philippe; Staab-Weijnitz, Claudia A; von Brunn, Albrecht; Steinmann, Eike; Dijkman, Ronald; Zimmer, Gert; Pfaender, Stephanie; Thiel, Volker (2021). A genome-wide CRISPR screen identifies interactors of the autophagy pathway as conserved coronavirus targets. PLoS biology, 19(12), e3001490. Public Library of Science10.1371/journal.pbio.3001490

Stervbo, Ulrik; Blazquez-Navarro, Arturo; Blanco, Elena Vidal; Safi, Lema; Meister, Toni L; Paniskaki, Krystallenia; Stockhausen, Mara; Marheinecke, Corinna; Zimmer, Gert; Wellenkötter, Jacqueline; Giglio, Tina; Arora, Prerna; Pöhlmann, Stefan; Hoffmann, Markus; Seibert, Felix S; Pfaender, Stephanie; Roch, Toralf; Westhoff, Timm H; Cinkilic, Okan and Babel, Nina (2021). Improved cellular and humoral immunity upon a second BNT162b2 and mRNA-1273 boost in prime-boost vaccination no/low responders with end-stage renal disease. Kidney international, 100(6), pp. 1335-1337. Elsevier10.1016/j.kint.2021.09.015

Weigang, Sebastian; Fuchs, Jonas; Zimmer, Gert; Schnepf, Daniel; Kern, Lisa; Beer, Julius; Luxenburger, Hendrik; Ankerhold, Jakob; Falcone, Valeria; Kemming, Janine; Hofmann, Maike; Thimme, Robert; Neumann-Haefelin, Christoph; Ulferts, Svenja; Grosse, Robert; Hornuss, Daniel; Tanriver, Yakup; Rieg, Siegbert; Wagner, Dirk; Huzly, Daniela; ... (2021). Within-host evolution of SARS-CoV-2 in an immunosuppressed COVID-19 patient as a source of immune escape variants. Nature Communications, 12(1), p. 6405. Springer Nature10.1038/s41467-021-26602-3

Cramer, Jonathan; Lakkaichi, Adem; Aliu, Butrint; Jakob, Roman P; Klein, Sebastian; Cattaneo, Ivan; Jiang, Xiaohua; Rabbani, Said; Schwardt, Oliver; Zimmer, Gert; Ciancaglini, Matias; Abreu Mota, Tiago; Maier, Timm; Ernst, Beat (2021). Sweet Drugs for Bad Bugs: A Glycomimetic Strategy against the DC-SIGN-Mediated Dissemination of SARS-CoV-2. Journal of the American Chemical Society, 143(42), pp. 17465-17478. American Chemical Society10.1021/jacs.1c06778

Sava, Mihaela; Sommer, Gregor; Daikeler, Thomas; Woischnig, Anne-Kathrin; Martinez, Aurelien E; Leuzinger, Karoline; Hirsch, Hans H.; Erlanger, Tobias; Wiencierz, Andrea; Bassetti, Stefano; Tamm, Michael; Tschudin-Sutter, Sarah; Stoeckle, Marcel; Pargger, Hans; Siegemund, Martin; Boss, Renate; Zimmer, Gert; Vu, Diem-Lan; Kaiser, Laurent; Dell-Kuster, Salome; ... (2021). Ninety-day outcome of patients with severe COVID-19 treated with tocilizumab - a single centre cohort study. Swiss medical weekly, 151(w20550), w20550. EMH Media10.4414/smw.2021.20550

Garcia Nicolas, Obdulio; V'kovski, Philip; Zettl, Ferdinand; Zimmer, Gert; Thiel, Volker; Summerfield, Artur (2021). No Evidence for Human Monocyte-Derived Macrophage Infection and Antibody-Mediated Enhancement of SARS-CoV-2 Infection. Frontiers in cellular and infection microbiology, 11(644574), p. 644574. Frontiers10.3389/fcimb.2021.644574

Zimmer, Gert (2021). Rhabdoviruses as Vaccine Vectors for Veterinary Pathogens. In:Vanniasinkam, Thiru; Tikoo, Suresh K.; Samal, Siba K. (eds.) Viral Vectors in Veterinary Vaccine Development: A Textbook (pp. 141-148). Springer10.1007/978-3-030-51927-8_9

2020

Moreno, Hector; Rastrojo, Alberto; Pryce, Rhys; Fedeli, Chiara; Zimmer, Gert; Bowden, Thomas A; Gerold, Gisa; Kunz, Stefan (2020). A novel circulating tamiami mammarenavirus shows potential for zoonotic spillover. PLoS neglected tropical diseases, 14(12), e0009004. Public Library of Science10.1371/journal.pntd.0009004

Pfaender, Stephanie; Mar, Katrina B; Michailidis, Eleftherios; Kratzel, Annika; Boys, Ian N; V'kovski, Philip; Fan, Wenchun; Kelly, Jenna N.; Hirt, Dagny; Ebert, Nadine; Stalder, Hanspeter; Kleine-Weber, Hannah; Hoffmann, Markus; Heinrich Hoffmann, H; Saeed, Mohsan; Dijkman, Ronald; Steinmann, Eike; Wight-Carter, Mary; McDougal, Matthew B; Hanners, Natasha W; ... (2020). LY6E impairs coronavirus fusion and confers immune control of viral disease. Nature microbiology, 5(11), pp. 1330-1339. Springer Nature10.1038/s41564-020-0769-y

Meyer, Benjamin; Torriani, Giulia; Yerly, Sabine; Mazza, Lena; Calame, Adrien; Arm-Vernez, Isabelle; Zimmer, Gert; Agoritsas, Thomas; Stirnemann, Jérôme; Spechbach, Hervé; Guessous, Idris; Stringhini, Silvia; Pugin, Jérôme; Roux-Lombard, Pascale; Fontao, Lionel; Siegrist, Claire-Anne; Eckerle, Isabella; Vuilleumier, Nicolas; Kaiser, Laurent (2020). Validation of a commercially available SARS-CoV-2 serological immunoassay. Clinical microbiology and infection, 26(10), pp. 1386-1394. Elsevier10.1016/j.cmi.2020.06.024

Zettl, Ferdinand; Meister, Toni Luise; Vollmer, Tanja; Fischer, Bastian; Steinmann, Jörg; Krawczyk, Adalbert; V'kovski, Philip; Todt, Daniel; Steinmann, Eike; Pfaender, Stephanie; Zimmer, Gert (2020). Rapid Quantification of SARS-CoV-2-Neutralizing Antibodies Using Propagation-Defective Vesicular Stomatitis Virus Pseudotypes. Vaccines, 8(3) MDPI10.3390/vaccines8030386

2019

Torriani, Giulia; Mayor, Jennifer; Zimmer, Gert; Kunz, Stefan; Rothenberger, Sylvia; Engler, Olivier (2019). Macropinocytosis contributes to hantavirus entry into human airway epithelial cells. Virology, 531, pp. 57-68. Elsevier10.1016/j.virol.2019.02.013

Torriani, Giulia; Trofimenko, Evgeniya; Mayor, Jennifer; Fedeli, Chiara; Moreno, Hector; Michel, Sébastien; Heulot, Mathieu; Chevalier, Nadja; Zimmer, Gert; Shrestha, Neeta; Plattet, Philippe; Engler, Olivier; Rothenberger, Sylvia; Widmann, Christian; Kunz, Stefan (2019). Identification of Clotrimazole Derivatives as Specific Inhibitors of Arenavirus Fusion. Journal of virology, 93(6) American Society for Microbiology10.1128/JVI.01744-18

Karakus, Umut; Thamamongood, Thiprampai; Ciminski, Kevin; Ran, Wei; Günther, Sira C; Pohl, Marie O; Eletto, Davide; Jeney, Csaba; Hoffmann, Donata; Reiche, Sven; Schinköthe, Jan; Ulrich, Reiner; Wiener, Julius; Hayes, Michael G B; Chang, Max W; Hunziker, Annika; Yángüez, Emilio; Aydillo, Teresa; Krammer, Florian; Oderbolz, Josua; ... (2019). MHC class II proteins mediate cross-species entry of bat influenza viruses. Nature, 567(7746), pp. 109-112. Springer Nature10.1038/s41586-019-0955-3

2018

Krischuns, Tim; Günl, Franziska; Henschel, Lea; Binder, Marco; Willemsen, Joschka; Schloer, Sebastian; Rescher, Ursula; Gerlt, Vanessa; Zimmer, Gert; Nordhoff, Carolin; Ludwig, Stephan; Brunotte, Linda (2018). Phosphorylation of TRIM28 Enhances the Expression of IFN-β and Proinflammatory Cytokines During HPAIV Infection of Human Lung Epithelial Cells. Frontiers in immunology, 9, p. 2229. Frontiers Research Foundation10.3389/fimmu.2018.02229

Walz, Lisa; Kays, Sarah-Katharina; Zimmer, Gert; von Messling, Veronika (2018). Neuraminidase-Inhibiting Antibody Titers Correlate with Protection from Heterologous Influenza Virus Strains of the Same Neuraminidase Subtype. Journal of virology, 92(17) American Society for Microbiology10.1128/JVI.01006-18

Locher, Samira; Schweneker, Marc; Hausmann, Jürgen; Zimmer, Gert (2018). Immunogenicity of propagation-restricted vesicular stomatitis virus encoding Ebola virus glycoprotein in guinea pigs. Journal of general virology, 99(7), pp. 866-879. Society for General Microbiology10.1099/jgv.0.001085

2017

Galan-Navarro, Clara; Rincon-Restrepo, Marcela; Zimmer, Gert; Ollmann Saphire, Erica; Hubbell, Jeffrey A; Hirosue, Sachiko; Swartz, Melody A; Kunz, Stefan (2017). Oxidation-sensitive polymersomes as vaccine nanocarriers enhance humoral responses against Lassa virus envelope glycoprotein. Virology, 512, pp. 161-171. Academic Press10.1016/j.virol.2017.09.013

Ricklin, Meret; Python, Sylvie; Vielle, Nathalie Jane; Brechbühl, Daniel; Zumkehr, Béatrice; Posthaus, Horst; Zimmer, Gert; Ruggli, Nicolas; Summerfield, Artur (2017). Virus replicon particle vaccines expressing nucleoprotein of influenza A virus mediate enhanced inflammatory responses in pigs. Scientific Reports, 7(1), p. 16379. Nature Publishing Group10.1038/s41598-017-16419-w

Ciminski, Kevin; Thamamongood, Thiprampai; Zimmer, Gert; Schwemmle, Martin (2017). Novel insights into bat influenza A viruses. Journal of general virology, 98(10), pp. 2393-2400. Society for General Microbiology10.1099/jgv.0.000927

Fuchs, Jonas; Hölzer, Martin; Schilling, Mirjam; Patzina, Corinna; Schoen, Andreas; Hoenen, Thomas; Zimmer, Gert; Marz, Manja; Weber, Friedemann; Müller, Marcel A; Kochs, Georg (2017). Evolution and Antiviral Specificities of Interferon-Induced Mx Proteins of Bats against Ebola, Influenza, and Other RNA Viruses. Journal of virology, 91(15) American Society for Microbiology10.1128/JVI.00361-17

Schweneker, Marc; Laimbacher, Andrea S; Zimmer, Gert; Wagner, Susanne; Schraner, Elisabeth M; Wolferstätter, Michael; Klingenberg, Marieken; Dirmeier, Ulrike; Steigerwald, Robin; Lauterbach, Henning; Hochrein, Hubertus; Chaplin, Paul; Suter, Mark; Hausmann, Jürgen (2017). Recombinant Modified Vaccinia Virus Ankara Generating Ebola Virus-Like Particles. Journal of virology, 91(11) American Society for Microbiology10.1128/JVI.00343-17

2016

Moreira, Étori Aguiar; Locher, Samira; Kolesnikova, Larissa; Bolte, Hardin; Aydillo, Teresa; García-Sastre, Adolfo; Schwemmle, Martin; Zimmer, Gert (2016). Synthetically derived bat influenza A-like viruses reveal a cell type- but not species-specific tropism. Proceedings of the National Academy of Sciences of the United States of America - PNAS, 113(45), pp. 12797-12802. National Academy of Sciences NAS10.1073/pnas.1608821113

Fallet, Benedict; Narr, Kerstin; Ertuna, Yusuf I; Remy, Melissa; Sommerstein, R.; Cornille, Karen; Kreutzfeldt, Mario; Page, Nicolas; Zimmer, Gert; Geier, Florian; Straub, Tobias; Pircher, Hanspeter; Larimore, Kevin; Greenberg, Philip D; Merkler, Doron; Pinschewer, Daniel D (2016). Interferon-driven deletion of antiviral B cells at the onset of chronic infection. Science immunology, 1(4) American Association for the Advancement of Science10.1126/sciimmunol.aah6817

Moreira, Étori Aguiar; Weber, Anna; Bolte, Hardin; Kolesnikova, Larissa; Giese, Sebastian; Lakdawala, Seema; Beer, Martin; Zimmer, Gert; García-Sastre, Adolfo; Schwemmle, Martin; Juozapaitis, Mindaugas (2016). A conserved influenza A virus nucleoprotein code controls specific viral genome packaging. Nature communications, 7(12861), p. 12861. Nature Publishing Group10.1038/ncomms12861

Moeschler, Sarah; Locher, Samira; Conzelmann, Karl-Klaus; Krämer, Beate; Zimmer, Gert (2016). Quantification of Lyssavirus-Neutralizing Antibodies Using Vesicular Stomatitis Virus Pseudotype Particles. Viruses, 8(9) MDPI10.3390/v8090254

Eck, Melanie; Durán, Margarita García; Ricklin, Meret; Locher, Samira; Sarraseca, Javier; Rodríguez, María José; McCullough, Kenneth; Summerfield, Artur; Zimmer, Gert; Ruggli, Nicolas (2016). Virus replicon particles expressing porcine reproductive and respiratory syndrome virus proteins elicit immune priming but do not confer protection from viremia in pigs. Veterinary research, 47(33), p. 33. BioMed Central10.1186/s13567-016-0318-0

Ricklin, Meret; Vielle, Nathalie Jane; Python, Sylvie; Brechbühl, Daniel; Zumkehr, Beatrice; Posthaus, Horst; Zimmer, Gert; Summerfield, Artur (2016). Partial Protection against Porcine Influenza A Virus by a Hemagglutinin-Expressing Virus Replicon Particle Vaccine in the Absence of Neutralizing Antibodies. Frontiers in immunology, 7(253), p. 253. Frontiers Research Foundation10.3389/fimmu.2016.00253

2015

Bolz, Miriam; Kerber, Sarah; Zimmer, Gert; Pluschke, Gerd (2015). Use of Recombinant Virus Replicon Particles for Vaccination against Mycobacterium ulcerans Disease. PLoS neglected tropical diseases, 9(8), e0004011. Public Library of Science10.1371/journal.pntd.0004011

Halbherr, Stefan J; Ludersdorfer, Thomas H; Ricklin, Meret; Locher, Samira; Berger Rentsch, Marianne; Summerfield, Artur; Zimmer, Gert (2015). Biological and protective properties of immune sera directed to the influenza virus neuraminidase. Journal of virology, 89(3), pp. 1550-1563. American Society for Microbiology10.1128/JVI.02949-14

2014

Zimmer, Gert; Locher, Samira; Berger Rentsch, Marianne; Halbherr, Stefan J (2014). Pseudotyping of vesicular stomatitis virus with the envelope glycoproteins of highly pathogenic avian influenza viruses. Journal of general virology, 95(Pt 8), pp. 1634-1639. Society for General Microbiology10.1099/vir.0.065201-0

Bolz, Miriam; Ruggli, Nicolas; Ruf, Marie-Thérèse; Ricklin, Meret E; Zimmer, Gert; Pluschke, Gerd (2014). Experimental infection of the pig with Mycobacterium ulcerans: a novel model for studying the pathogenesis of Buruli ulcer disease. PLoS neglected tropical diseases, 8(7), e2968. Public Library of Science10.1371/journal.pntd.0002968

Juozapaitis, Mindaugas; Aguiar Moreira, Étori; Mena, Ignacio; Giese, Sebastian; Riegger, David; Pohlmann, Anne; Höper, Dirk; Zimmer, Gert; Beer, Martin; García-Sastre, Adolfo; Schwemmle, Martin (2014). An infectious bat-derived chimeric influenza virus harbouring the entry machinery of an influenza A virus. Nature communications, 5, p. 4448. Nature Publishing Group10.1038/ncomms5448

Kochinger, Stefanie (2014). Development of a novel marker vaccine platform for protection against Bluetongue Virus (BTV). (Dissertation, University of Bern, Graduate School for Cellular and Biomedical Sciences)

Kochinger, Stefanie; Renevey, Nathalie; Hofmann, Martin A; Zimmer, Gert (2014). Vesicular stomatitis virus replicon expressing the VP2 outer capsid protein of bluetongue virus serotype 8 induces complete protection of sheep against challenge infection. Veterinary research, 45(1), p. 64. BioMed Central10.1186/1297-9716-45-64