Davide Normanno | Centre National de la Recherche Scientifique / French National Centre for Scientific Research (original) (raw)

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Papers by Davide Normanno

Research paper thumbnail of Transient loss of Polycomb components induces an epigenetic cancer fate

SummaryCell fate depends on genetic, epigenetic and environmental inputs that are interconnected,... more SummaryCell fate depends on genetic, epigenetic and environmental inputs that are interconnected, making it difficult to disentangle their respective contributions to cell fate decisions1-3, and epigenetic reprogramming is a major contributor to tumor plasticity and adaptation4-6. Although cancer initiation and progression are generally associated with the accumulation of somatic mutations7,8, substantial epigenomic alterations underlie many aspects of tumorigenesis and cancer susceptibility9-18, suggesting that genetic mechanisms alone may not be sufficient to drive malignant transformations19-23. However, whether purely non-genetic reprogramming mechanisms are sufficient to initiate tumorigenesis irrespective of mutations is unknown. Here, we show that a transient perturbation of transcriptional silencing mediated by Polycomb-Group proteins is sufficient to induce an irreversible switch to a cancer cell fate inDrosophila. This is linked to the irreversible derepression of genes th...

Research paper thumbnail of Author response: Mutational phospho-mimicry reveals a regulatory role for the XRCC4 and XLF C-terminal tails in modulating DNA bridging during classical non-homologous end joining

Research paper thumbnail of Spin absorption, windmill, and magneto-optic effects in optical angular momentum transfer

Physical Review A, Nov 30, 2004

Research paper thumbnail of Exploring molecular motors and switches at the single-molecule level

Microscopy Research and Technique, Nov 1, 2004

Single‐molecule techniques have propelled an impressive number of biophysical studies during the ... more Single‐molecule techniques have propelled an impressive number of biophysical studies during the last decade. From relatively simple video‐microscopy techniques, to sophisticated manipulation and detection apparata, single‐molecule techniques are capable of tracking the movements and the reaction trajectories of single enzymatic units. By observing microspheres attached to biomolecules it is possible to follow the motion of molecular motors, or to detect conformational “switching” induced by regulatory proteins. Micromanipulation tools like optical tweezers have been widely applied to understand the mechanisms of linear molecular motors, and have allowed the measurement of the elementary steps and the forces produced by several motor proteins, including myosin, kinesin, and dynein. New experimental assays based on magnetic or optical “wrenches,” which are able to apply and detect torques on rotary motors and biopolymers, are opening new possibilities in this field. Here, established and emerging magneto‐optical manipulation and video‐tracking techniques are reviewed, in the perspective of single molecular motors and regulatory proteins studies. Microsc. Res. Tech. 65:194–204, 2004. © 2005 Wiley‐Liss, Inc.

Research paper thumbnail of Mutational phospho-mimicry reveals a regulatory role for the XRCC4 and XLF C-terminal tails in modulating DNA bridging during classical non-homologous end joining

Research paper thumbnail of Structural transitions in the GTP cap visualized by cryo-EM of catalytically inactive microtubules

bioRxiv (Cold Spring Harbor Laboratory), Aug 13, 2021

Research paper thumbnail of Surface patterning: Small 11/2009

Research paper thumbnail of Dynamic Re-organization of Individual Adhesion Nanoclusters in Living Cells by Ligand-Patterned Surfaces

Small, Jun 5, 2009

... 11 DE Staunton, ML Dustin, TA Springer, Nature 1989, 339, 61– 64. ... 12 AR De Fougerolles, T... more ... 11 DE Staunton, ML Dustin, TA Springer, Nature 1989, 339, 61– 64. ... 12 AR De Fougerolles, TA Springer, J. Exp. Med. 1992, 175, 185– 190. ... 13 T. Schmidt, GJ Schutz, W. Baumgartner, HJ Gruber, H. Schindler, Proc. Natl. Acad. Sci. USA 1996, 93, 2926– 2929. ...

Research paper thumbnail of Structural transitions in the GTP cap visualized by cryo-electron microscopy of catalytically inactive microtubules

Proceedings of the National Academy of Sciences of the United States of America, Jan 7, 2022

Research paper thumbnail of Gradual compaction of the central spindle decreases its dynamicity in PRC1 and EB1 gene-edited cells

Life science alliance, Sep 27, 2021

Research paper thumbnail of High-precision measurements of light-induced torque on absorbing microspheres

Optics Letters, Oct 1, 2004

Laser beams have been demonstrated to be capable of exerting torque as well as forces on micropar... more Laser beams have been demonstrated to be capable of exerting torque as well as forces on microparticles. Using a custom magneto-optic manipulator, we directly measured the torque exerted by laser light on absorbing microspheres as a result of the transfer of spin angular momentum. A general method for measuring torque has been developed, and the experimental apparatus has shown a sensitivity of approximately 1 pN/nm.

Research paper thumbnail of Probing the Structural Dynamics of a Bacterial Chaperone in Its Native Environment by Nitroxide‐Based EPR Spectroscopy

Chemistry: A European Journal, Oct 31, 2022

One of the greatest current challenges in structural biology is to study protein dynamics over a ... more One of the greatest current challenges in structural biology is to study protein dynamics over a wide range of timescales in complex environments, such as the cell. Among magnetic resonances suitable for this approach, electron paramagnetic resonance spectroscopy coupled to site‐directed spin labeling (SDSL‐EPR) has emerged as a promising tool to study protein local dynamics and conformational ensembles. In this work, we exploit the sensitivity of nitroxide labels to report protein local dynamics at room temperature. We demonstrate that such studies can be performed while preserving both the integrity of the cells and the activity of the protein under investigation. Using this approach, we studied the structural dynamics of the chaperone NarJ in its natural host, Escherichia coli. We established that spin‐labeled NarJ is active inside the cell. We showed that the cellular medium affects NarJ structural dynamics in a site‐specific way, while the structural flexibility of the protein is maintained. Finally, we present and discuss data on the time‐resolved dynamics of NarJ in cellular context.

Research paper thumbnail of How DNA-Binding Proteins find their Target Sites in Human Cells

Biophysical Journal, 2013

Research paper thumbnail of Probing Target Search Mechanisms of Transcription Factors in Human Cells

Biophysical Journal, Feb 1, 2011

Research paper thumbnail of Near-Field Optical Microscopy

Chapman and Hall/CRC eBooks, Apr 26, 2010

Research paper thumbnail of Intra-nuclear mobility and target search mechanisms of transcription factors: A single-molecule perspective on gene expression

Biochimica et biophysica acta, Jun 1, 2012

Research paper thumbnail of Single-molecule manipulation reveals supercoiling-dependent modulation of lac repressor-mediated DNA looping

Nucleic Acids Research, Feb 29, 2008

Research paper thumbnail of Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI

Nucleic Acids Research, Jan 8, 2006

Research paper thumbnail of Probing the target search of DNA-binding proteins in mammalian cells using TetR as model searcher

Nature Communications, Jul 7, 2015

Research paper thumbnail of A novel regulatory mechanism of actin cytoskeleton dynamics through a neural microexon in DAAM1 is important for proper memory formation

bioRxiv (Cold Spring Harbor Laboratory), Jan 12, 2023

Research paper thumbnail of Transient loss of Polycomb components induces an epigenetic cancer fate

SummaryCell fate depends on genetic, epigenetic and environmental inputs that are interconnected,... more SummaryCell fate depends on genetic, epigenetic and environmental inputs that are interconnected, making it difficult to disentangle their respective contributions to cell fate decisions1-3, and epigenetic reprogramming is a major contributor to tumor plasticity and adaptation4-6. Although cancer initiation and progression are generally associated with the accumulation of somatic mutations7,8, substantial epigenomic alterations underlie many aspects of tumorigenesis and cancer susceptibility9-18, suggesting that genetic mechanisms alone may not be sufficient to drive malignant transformations19-23. However, whether purely non-genetic reprogramming mechanisms are sufficient to initiate tumorigenesis irrespective of mutations is unknown. Here, we show that a transient perturbation of transcriptional silencing mediated by Polycomb-Group proteins is sufficient to induce an irreversible switch to a cancer cell fate inDrosophila. This is linked to the irreversible derepression of genes th...

Research paper thumbnail of Author response: Mutational phospho-mimicry reveals a regulatory role for the XRCC4 and XLF C-terminal tails in modulating DNA bridging during classical non-homologous end joining

Research paper thumbnail of Spin absorption, windmill, and magneto-optic effects in optical angular momentum transfer

Physical Review A, Nov 30, 2004

Research paper thumbnail of Exploring molecular motors and switches at the single-molecule level

Microscopy Research and Technique, Nov 1, 2004

Single‐molecule techniques have propelled an impressive number of biophysical studies during the ... more Single‐molecule techniques have propelled an impressive number of biophysical studies during the last decade. From relatively simple video‐microscopy techniques, to sophisticated manipulation and detection apparata, single‐molecule techniques are capable of tracking the movements and the reaction trajectories of single enzymatic units. By observing microspheres attached to biomolecules it is possible to follow the motion of molecular motors, or to detect conformational “switching” induced by regulatory proteins. Micromanipulation tools like optical tweezers have been widely applied to understand the mechanisms of linear molecular motors, and have allowed the measurement of the elementary steps and the forces produced by several motor proteins, including myosin, kinesin, and dynein. New experimental assays based on magnetic or optical “wrenches,” which are able to apply and detect torques on rotary motors and biopolymers, are opening new possibilities in this field. Here, established and emerging magneto‐optical manipulation and video‐tracking techniques are reviewed, in the perspective of single molecular motors and regulatory proteins studies. Microsc. Res. Tech. 65:194–204, 2004. © 2005 Wiley‐Liss, Inc.

Research paper thumbnail of Mutational phospho-mimicry reveals a regulatory role for the XRCC4 and XLF C-terminal tails in modulating DNA bridging during classical non-homologous end joining

Research paper thumbnail of Structural transitions in the GTP cap visualized by cryo-EM of catalytically inactive microtubules

bioRxiv (Cold Spring Harbor Laboratory), Aug 13, 2021

Research paper thumbnail of Surface patterning: Small 11/2009

Research paper thumbnail of Dynamic Re-organization of Individual Adhesion Nanoclusters in Living Cells by Ligand-Patterned Surfaces

Small, Jun 5, 2009

... 11 DE Staunton, ML Dustin, TA Springer, Nature 1989, 339, 61– 64. ... 12 AR De Fougerolles, T... more ... 11 DE Staunton, ML Dustin, TA Springer, Nature 1989, 339, 61– 64. ... 12 AR De Fougerolles, TA Springer, J. Exp. Med. 1992, 175, 185– 190. ... 13 T. Schmidt, GJ Schutz, W. Baumgartner, HJ Gruber, H. Schindler, Proc. Natl. Acad. Sci. USA 1996, 93, 2926– 2929. ...

Research paper thumbnail of Structural transitions in the GTP cap visualized by cryo-electron microscopy of catalytically inactive microtubules

Proceedings of the National Academy of Sciences of the United States of America, Jan 7, 2022

Research paper thumbnail of Gradual compaction of the central spindle decreases its dynamicity in PRC1 and EB1 gene-edited cells

Life science alliance, Sep 27, 2021

Research paper thumbnail of High-precision measurements of light-induced torque on absorbing microspheres

Optics Letters, Oct 1, 2004

Laser beams have been demonstrated to be capable of exerting torque as well as forces on micropar... more Laser beams have been demonstrated to be capable of exerting torque as well as forces on microparticles. Using a custom magneto-optic manipulator, we directly measured the torque exerted by laser light on absorbing microspheres as a result of the transfer of spin angular momentum. A general method for measuring torque has been developed, and the experimental apparatus has shown a sensitivity of approximately 1 pN/nm.

Research paper thumbnail of Probing the Structural Dynamics of a Bacterial Chaperone in Its Native Environment by Nitroxide‐Based EPR Spectroscopy

Chemistry: A European Journal, Oct 31, 2022

One of the greatest current challenges in structural biology is to study protein dynamics over a ... more One of the greatest current challenges in structural biology is to study protein dynamics over a wide range of timescales in complex environments, such as the cell. Among magnetic resonances suitable for this approach, electron paramagnetic resonance spectroscopy coupled to site‐directed spin labeling (SDSL‐EPR) has emerged as a promising tool to study protein local dynamics and conformational ensembles. In this work, we exploit the sensitivity of nitroxide labels to report protein local dynamics at room temperature. We demonstrate that such studies can be performed while preserving both the integrity of the cells and the activity of the protein under investigation. Using this approach, we studied the structural dynamics of the chaperone NarJ in its natural host, Escherichia coli. We established that spin‐labeled NarJ is active inside the cell. We showed that the cellular medium affects NarJ structural dynamics in a site‐specific way, while the structural flexibility of the protein is maintained. Finally, we present and discuss data on the time‐resolved dynamics of NarJ in cellular context.

Research paper thumbnail of How DNA-Binding Proteins find their Target Sites in Human Cells

Biophysical Journal, 2013

Research paper thumbnail of Probing Target Search Mechanisms of Transcription Factors in Human Cells

Biophysical Journal, Feb 1, 2011

Research paper thumbnail of Near-Field Optical Microscopy

Chapman and Hall/CRC eBooks, Apr 26, 2010

Research paper thumbnail of Intra-nuclear mobility and target search mechanisms of transcription factors: A single-molecule perspective on gene expression

Biochimica et biophysica acta, Jun 1, 2012

Research paper thumbnail of Single-molecule manipulation reveals supercoiling-dependent modulation of lac repressor-mediated DNA looping

Nucleic Acids Research, Feb 29, 2008

Research paper thumbnail of Real-time observation of DNA looping dynamics of Type IIE restriction enzymes NaeI and NarI

Nucleic Acids Research, Jan 8, 2006

Research paper thumbnail of Probing the target search of DNA-binding proteins in mammalian cells using TetR as model searcher

Nature Communications, Jul 7, 2015

Research paper thumbnail of A novel regulatory mechanism of actin cytoskeleton dynamics through a neural microexon in DAAM1 is important for proper memory formation

bioRxiv (Cold Spring Harbor Laboratory), Jan 12, 2023

Research paper thumbnail of Near-Field Optical Microscopy

Nanoscopy and Multidimensional Optical Fluorescence Microscopy, 2010