Bioconductor Code: BioGA (original) (raw)

\[!\[R-CMD-check\](https://github.com/danymukesha/BioGA/actions/workflows/R-CMD-check.yaml/badge.svg)\](https://github.com/danymukesha/BioGA/actions/workflows/R-CMD-check.yaml) # BioGA BioGA website The \`BioGA\` package provides a set of functions for genetic algorithm optimization tailored for analyzing high throughput genomic data. These functions are implemented in C++ for improved speed and efficiency, with an easy-to-use interface for use within R. ## Installation You can install the package directly from GitHub using the \`devtools\` package: \`\`\` r devtools::install\_github("danymukesha/BioGA") #> Downloading GitHub repo danymukesha/BioGA@HEAD #> fs (1.6.3 -> 1.6.4 ) \[CRAN\] #> fastmap (1.1.1 -> 1.2.0 ) \[CRAN\] #> cachem (1.0.8 -> 1.1.0 ) \[CRAN\] #> xfun (0.42 -> 0.44 ) \[CRAN\] #> tinytex (0.50 -> 0.51 ) \[CRAN\] #> knitr (1.45 -> 1.46 ) \[CRAN\] #> htmltools (0.5.7 -> 0.5.8.1) \[CRAN\] #> bslib (0.6.1 -> 0.7.0 ) \[CRAN\] #> rmarkdown (2.26 -> 2.27 ) \[CRAN\] #> matrixStats (1.2.0 -> 1.3.0 ) \[CRAN\] #> munsell (0.5.0 -> 0.5.1 ) \[CRAN\] #> farver (2.1.1 -> 2.1.2 ) \[CRAN\] #> BiocManager (1.30.22 -> 1.30.23) \[CRAN\] #> bookdown (0.38 -> 0.39 ) \[CRAN\] #> gtable (0.3.4 -> 0.3.5 ) \[CRAN\] #> ggplot2 (3.5.0 -> 3.5.1 ) \[CRAN\] #> Skipping 17 packages ahead of CRAN: BiocGenerics, graph, S4Arrays, IRanges, S4Vectors, MatrixGenerics, GenomeInfoDbData, zlibbioc, XVector, GenomeInfoDb, RBGL, Biobase, DelayedArray, GenomicRanges, BiocStyle, biocViews, SummarizedExperiment #> Installing 16 packages: fs, fastmap, cachem, xfun, tinytex, knitr, htmltools, bslib, rmarkdown, matrixStats, munsell, farver, BiocManager, bookdown, gtable, ggplot2 #> Installing packages into 'C:/Users/dany.mukesha/AppData/Local/Temp/Rtmp63bptc/temp\_libpath848868d23488' #> (as 'lib' is unspecified) #> Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3: #> cannot open URL 'https://bioconductor.org/packages/3.17/data/annotation/bin/windows/contrib/4.3/PACKAGES' #> Warning: unable to access index for repository https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3: #> cannot open URL 'https://bioconductor.org/packages/3.17/data/experiment/bin/windows/contrib/4.3/PACKAGES' #> Warning: unable to access index for repository https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3: #> cannot open URL 'https://bioconductor.org/packages/3.17/workflows/bin/windows/contrib/4.3/PACKAGES' #> package 'fs' successfully unpacked and MD5 sums checked #> package 'fastmap' successfully unpacked and MD5 sums checked #> package 'cachem' successfully unpacked and MD5 sums checked #> package 'xfun' successfully unpacked and MD5 sums checked #> package 'tinytex' successfully unpacked and MD5 sums checked #> package 'knitr' successfully unpacked and MD5 sums checked #> package 'htmltools' successfully unpacked and MD5 sums checked #> package 'bslib' successfully unpacked and MD5 sums checked #> package 'rmarkdown' successfully unpacked and MD5 sums checked #> package 'matrixStats' successfully unpacked and MD5 sums checked #> package 'munsell' successfully unpacked and MD5 sums checked #> package 'farver' successfully unpacked and MD5 sums checked #> package 'BiocManager' successfully unpacked and MD5 sums checked #> package 'bookdown' successfully unpacked and MD5 sums checked #> package 'gtable' successfully unpacked and MD5 sums checked #> package 'ggplot2' successfully unpacked and MD5 sums checked #> #> The downloaded binary packages are in #> C:\\Users\\dany.mukesha\\AppData\\Local\\Temp\\RtmpArcJMj\\downloaded\_packages #> ── R CMD build ───────────────────────────────────────────────────────────────── #> checking for file 'C:\\Users\\dany.mukesha\\AppData\\Local\\Temp\\RtmpArcJMj\\remotes15e82c92423\\danymukesha-BioGA-23ecb91/DESCRIPTION' ... ✔ checking for file 'C:\\Users\\dany.mukesha\\AppData\\Local\\Temp\\RtmpArcJMj\\remotes15e82c92423\\danymukesha-BioGA-23ecb91/DESCRIPTION' (343ms) #> ─ preparing 'BioGA': #> checking DESCRIPTION meta-information ... checking DESCRIPTION meta-information ... ✔ checking DESCRIPTION meta-information #> ─ cleaning src #> ─ checking for LF line-endings in source and make files and shell scripts #> ─ checking for empty or unneeded directories #> Omitted 'LazyData' from DESCRIPTION #> ─ building 'BioGA\_0.99.5.tar.gz' #> #> #> Installing package into 'C:/Users/dany.mukesha/AppData/Local/Temp/Rtmp63bptc/temp\_libpath848868d23488' #> (as 'lib' is unspecified) \`\`\`