Bioconductor Code: CDI (original) (raw)

# Clustering Deviance Index (CDI) This repository stores the R package of the paper Clustering Deviation Index (CDI): A robust and accurate internal measure for evaluating scRNA-seq data clustering. ## Installation guidance This package has been accepted by Bioconductor. From Oct 2023, you can download the package from Bioconductor by ``` if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("CDI") ``` You can also download the most up-to-date package from Github by running ``` if (!requireNamespace("remotes", quietly = TRUE)) install.packages("remotes") remotes::install_github("jichunxie/CDI", build_vignettes = TRUE) ``` A tutorial of this package can be found by running the following block of codes in R ``` library(CDI) browseVignettes("CDI") ``` ## Related paper Clustering Deviation Index (CDI): a robust and accurate internal measure for evaluating scRNA-seq data clustering [https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02825-5\](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02825-5)