Bioconductor Code: CompoundDb (original) (raw)

[\](https://www.repostatus.org/#active) [\](https://github.com/RforMassSpectrometry/CompoundDb/actions?query=workflow%3AR-CMD-check-bioc) [\](https://codecov.io/gh/rformassspectrometry/CompoundDb) [\](https://opensource.org/licenses/Artistic-2.0) [\](https://bioconductor.org/packages/release/bioc/html/CompoundDb.html) [\](https://bioconductor.org/packages/stats/bioc/CompoundDb/) [\](https://bioconductor.org/checkResults/release/bioc-LATEST/CompoundDb/) [\](https://bioconductor.org/checkResults/devel/bioc-LATEST/CompoundDb/) `CompoundDb` ... preserve compound annotations. # Installation and requirements The package can be installed with ```r install.packages(c("BiocManager", "remotes")) BiocManager::install("CompoundDb") ``` # Creating and using (chemical) compound databases This package provides functionality to create and use compound databases generated from (mostly publicly) available resources such as [HMDB](http://www.hmdb.ca), [ChEBI](https://www.ebi.ac.uk/chebi/) and [PubChem](https://pubchem.ncbi.nlm.nih.gov). For more information see the package [homepage](https://rformassspectrometry.github.io/CompoundDb). # Contributions Contributions are highly welcome and should follow the [contribution guidelines](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html#contributions). Also, please check the coding style guidelines in the [RforMassSpectrometry vignette](https://rformassspectrometry.github.io/RforMassSpectrometry/articles/RforMassSpectrometry.html).