Bioconductor Code: GeneNetworkBuilder (original) (raw)

# GeneNetworkBuilder [\](http://bioconductor.org/packages/devel/bioc/html/GeneNetworkBuilder.html) [\](http://bioconductor.org/packages/devel/bioc/html/GeneNetworkBuilder.html) Build Regulatory Network from ChIP-chip/ChIP-seq and Expression Data Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF. ## Installation To install this package, start R and enter: ```r library(BiocManager) BiocManager::install("GeneNetworkBuilder") ``` ## Documentation To view documentation of GeneNetworkBuilder, start R and enter: ```r browseVignettes("GeneNetworkBuilder") ```