Bioconductor Code: ReactomePA (original) (raw)

# ReactomePA: Reactome Pathway Analysis [\](http://www.repostatus.org/#active) [\](https://codecov.io/gh/GuangchuangYu/ReactomePA/) [\](https://www.bioconductor.org/packages/ReactomePA) [\](https://github.com/guangchuangyu/ReactomePA) [\](https://www.bioconductor.org/packages/devel/bioc/html/clusterProfiler.html#since) [\](https://www.bioconductor.org/packages/devel/bioc/html/ReactomePA.html#archives) [\](https://github.com/GuangchuangYu/ReactomePA/commits/master) [\](https://bioconductor.org/checkResults/devel/bioc-LATEST/ReactomePA/) [\](https://travis-ci.org/GuangchuangYu/ReactomePA) [\](https://ci.appveyor.com/project/GuangchuangYu/ReactomePA) This package provides functions for pathway analysis based on REACTOME pathway database. It implements enrichment analysis, gene set enrichment analysis and several functions for visualization. For details, please visit https://yulab-smu.top/biomedical-knowledge-mining-book/. ## :writing_hand: Authors Guangchuang YU School of Basic Medical Sciences, Southern Medical University https://yulab-smu.top [\](https://twitter.com/intent/tweet?hashtags=ReactomePA&url=http://pubs.rsc.org/en/Content/ArticleLanding/2016/MB/C5MB00663E#!divAbstract) [\](https://saythanks.io/to/GuangchuangYu) [\](https://guangchuangyu.github.io/blog\_images/biobabble.jpg) ------------------------------------------------------------------------ Please cite the following article when using `ReactomePA`: ***G Yu***, QY He^\*. ReactomePA: an R/Bioconductor package for reactome pathway analysis and visualization. ***Molecular BioSystems*** 2016, 12(2):477-479. [\](https://doi.org/10.1039/c5mb00663e)