Bioconductor Code: categoryCompare (original) (raw)

[\](http://bioconductor.org/packages/release/bioc/html/categoryCompare.html "Bioconductor status") [\](http://bioconductor.org/packages/release/bioc/html/categoryCompare.html#archives "Platform availability") [\](http://bioconductor.org/packages/stats/bioc/categoryCompare.html "Percentile downloads") [\](http://bioconductor.org/packages/release/bioc/html/categoryCompare.html#svn\_source "svn commits") [\](https://support.bioconductor.org/t/categorycompare/ "Bioconductor support posts") [\](https://travis-ci.org/rmflight/categoryCompare "travis build status") [\](http://bioconductor.org/checkResults/release/bioc-LATEST/categoryCompare/ "Bioconductor release build") [\](http://bioconductor.org/checkResults/devel/bioc-LATEST/categoryCompare/ "Bioconductor devel build") # categoryCompare A Bioconductor package for meta analysis of high-throughput datasets using enriched feature annotations instead of just the features themselves. See the "Description" file for additional requirements. ## Documentation The [Vignette][vignLink] provides a description of the thinking behind this package as well as a toy example for demonstration purposes. ## Installation Installation of this package from Github requires the [devtools][devtoolsLink] package. ```r install.packages("devtools") library(devtools) install_github("categoryCompare", "rmflight") ``` Alternatively, you can install **categoryCompare** from Bioconductor itself. ```r if (!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("categoryCompare") ``` [vignLink]: http://rmflight.github.io/categoryCompare/index.html "categoryCompare Vignette" [devtoolsLink]: https://github.com/hadley/devtools "devtools" ## Citation Flight RM, Harrison BJ, Mohammad F, Bunge MB, Moon LDF, Petruska JC and Rouchka EC (2014). .CATEGORYCOMPARE, an analytical tool based on feature annotations. _Frontiers in Genetics_. [link](http://dx.doi.org/10.3389/fgene.2014.00098) ## Bug Reports / Issues The official development site for `categoryCompare` is at https://github.com/rmflight/categoryCompare. There you may submit bug-reports / issues / comments to the developer.