# cellmigRation An R package for tracking cells and analyzing their trajectories. # Installation cellmigRation is under active development and a stable version is yet to be released. However, you can install the current development version of cellmigRation from \[GitHub\](https://github.com/) with: \`\`\` r # install.packages("remotes") remotes::install\_github("ocbe-uio/cellmigRation") \`\`\` # Example Example usage: \`\`\` r library(cellmigRation) #> Loading required package: foreach data(TrajectoryDataset) df <- CellMig(TrajectoryDataset\[1:100, \]) preproc <- rmPreProcessing(df, PixelSize = 1.24, TimeInterval = 100) #> This dataset contains: 1 cell(s) in total #> This dataset contains: 1 cell(s) with more than three steps in their tracks #> The minimum number of steps: 100 #> The maximum number of steps: 100 #> Number of cells with a total number of steps less than 100 steps : 0 #> All the tracks are adjusted to have only 100 steps \`\`\` # Shiny application Some cellmigRation features are also available as a standalone web application powered by an R package called Shiny. \*\*The Shiny app is still under construction\*\*, so it is not feature-complete and is not guaranteed to perform as expected. Until release, we advise you to use the R package directly. To access the cellmigRation Shiny app, visit . Alternatively, you can run the Shiny app locally on your computer. To do so, download a copy of this repository and either run \`make runshiny\` or \`R -e "shiny::runApp('Shinyapp', port=3029)"\` from its root directory. # Statistics for developers \[!\[Build Status\](https://travis-ci.org/ocbe-uio/cellmigRation.svg?branch=master)\](https://travis-ci.org/ocbe-uio/cellmigRation)
An R package for tracking cells and analyzing their trajectories. # Installation cellmigRation is under active development and a stable version is yet to be released. However, you can install the current development version of cellmigRation from \[GitHub\](https://github.com/) with: \`\`\` r # install.packages("remotes") remotes::install\_github("ocbe-uio/cellmigRation") \`\`\` # Example Example usage: \`\`\` r library(cellmigRation) #> Loading required package: foreach data(TrajectoryDataset) df <- CellMig(TrajectoryDataset\[1:100, \]) preproc <- rmPreProcessing(df, PixelSize = 1.24, TimeInterval = 100) #> This dataset contains: 1 cell(s) in total #> This dataset contains: 1 cell(s) with more than three steps in their tracks #> The minimum number of steps: 100 #> The maximum number of steps: 100 #> Number of cells with a total number of steps less than 100 steps : 0 #> All the tracks are adjusted to have only 100 steps \`\`\` # Shiny application Some cellmigRation features are also available as a standalone web application powered by an R package called Shiny. \*\*The Shiny app is still under construction\*\*, so it is not feature-complete and is not guaranteed to perform as expected. Until release, we advise you to use the R package directly. To access the cellmigRation Shiny app, visit . Alternatively, you can run the Shiny app locally on your computer. To do so, download a copy of this repository and either run \`make runshiny\` or \`R -e "shiny::runApp('Shinyapp', port=3029)"\` from its root directory. # Statistics for developers \[!\[Build Status\](https://travis-ci.org/ocbe-uio/cellmigRation.svg?branch=master)\](https://travis-ci.org/ocbe-uio/cellmigRation)