Bioconductor Code: diffHic (original) (raw)

# Differential analyses of Hi-C data |Environment|Status| |---|---| |[BioC-release](https://bioconductor.org/packages/release/bioc/html/diffHic.html)|\[!\[Release OK](https://bioconductor.org/shields/build/release/bioc/diffHic.svg)\](http://bioconductor.org/checkResults/release/bioc-LATEST/diffHic/)| |[BioC-devel](https://bioconductor.org/packages/devel/bioc/html/diffHic.html)|\[!\[Devel OK](https://bioconductor.org/shields/build/devel/bioc/diffHic.svg)\](http://bioconductor.org/checkResults/devel/bioc-LATEST/diffHic/)| **diffHic** implements methods for detecting differential interactions across biological conditions in a Hi-C experiment. Methods are provided for read alignment and data pre-processing into interaction counts, with the subsequent statistics analysis performed by **edgeR**. Check out the [Bioconductor landing page](https://bioconductor.org/packages/diffHic) for more details.