Bioconductor Code: simPIC (original) (raw)

# simPIC ## Overview simPIC is an R package for simple simulation of single-cell Assay for Transposase Accessible Chromatin sequencing (scATAC-seq) data. simPIC provides an easy to use interface for: * estimating simulation parameters * Objects for storing those parameters * simulating counts using those parameters ## News **Version 1.5.3 (Development Version)** - Major updates to `simPICsimulate` function to allow simulating multiple cell-types and batch effects. For full change logs, please refer to the [NEWS file](https://github.com/sagrikachugh/simPIC/blob/devel/NEWS.md). ## Installation The package can be installed from Bioconductor using the following code ```r if(!requireNamespace("BiocManager", quietly=TRUE)) install.packages("BiocManager") BiocManager::install("simPIC") ``` For development version ```r BiocManager::install( "sagrikachugh/simPIC", dependencies = TRUE, build_vignettes = TRUE ) ``` ## Getting started To get started, check out the vignette for a quick start and detailed look into simPIC. ```r library(simPIC) browseVignettes("simPIC") ```