Bioconductor Code: tRNA (original) (raw)

# tRNA [\](https://github.com/FelixErnst/tRNA/actions/) [\](http://bioconductor.org/checkResults/release/bioc-LATEST/tRNA/) [\](https://codecov.io/gh/FelixErnst/tRNA) [\](https://doi.org/doi:10.18129/B9.bioc.tRNA) The tRNA package allows feature information of tRNAs to be accessed and list of tRNA to be subset based on these features. The main purpose is to unify overlapping functions from the [`tRNAscanImport`](https://doi.org/doi:10.18129/B9.bioc.tRNAscanImport) and [`tRNAdbImport`](https://github.com/FelixErnst/tRNAdbImport) packages. The functionality is currently under development and may change. The package expects a `GRanges` object with certain columns as input. The following columns are a requirement: `tRNA_length`, `tRNA_type`, `tRNA_anticodon`, `tRNA_seq`, `tRNA_str`, `tRNA_CCA.end`. Outputs of `tRNAscanImport` and `tRNAdbImport` meet these requirements. ## Installation The current version of the `tRNA` package is available from Bioconductor. ```{r} BiocManager::install("tRNA") # Load and attach thepackage library("tRNA") ``` ## Functions Have a look at the vignette for an overview of the functionality. Additional functions are planned to be added in the future.