Bioconductor Code: tRNAdbImport (original) (raw)

# tRNAdbImport [\](https://github.com/FelixErnst/tRNAdbImport/actions/) [\](http://bioconductor.org/checkResults/release/bioc-LATEST/tRNAdbImport/) [\](https://codecov.io/gh/FelixErnst/tRNAdbImport) [\](https://doi.org/doi:10.18129/B9.bioc.tRNAdbImport) The tRNAdb and mttRNAdb ([Juehling et al. 2009](#Literature)) is a compilation of tRNA sequences and tRNA genes. It is a follow up version of the database of [Sprinzl et al. (2005)](#Literature). Using `tRNAdbImport` the tRNAdb can be accessed as outlined on the website [trna.bioinf.uni-leipzig.de](trna.bioinf.uni-leipzig.de) directly via R. The results are returned as a `GRanges` object and can be further used in a BioC context. # Installation The current version of the `tRNAdbImport` package is available from Bioconductor. ```{r} if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("tRNAdbImport") # Load and attach the package library("tRNAdbImport") ``` ## Literature - Jühling, Frank; Mörl, Mario; Hartmann, Roland K.; Sprinzl, Mathias; Stadler, Peter F.; Pütz, Joern (2009): "TRNAdb 2009: Compilation of tRNA Sequences and tRNA Genes." Nucleic Acids Research 37 (suppl_1): D159–D162. doi:[10.1093/nar/gkn772](https://doi.org/10.1093/nar/gkn772). - Sprinzl, Mathias; Vassilenko, Konstantin S. (2005): "Compilation of tRNA Sequences and Sequences of tRNA Genes." Nucleic Acids Research 33 (suppl_1): D139–D140. doi:[10.1093/nar/gki012](https://doi.org/10.1093/nar/gki012).