Cooler — cooler 0.10.3 documentation (original) (raw)

Cooler is a Python support library for .cool/.mcool files: an efficient storage format for high resolution genomic interaction matrices.

The cooler package aims to facilitate:

Creation, aggregation and manipulation of genomically-labeled sparse matrices.
Querying: sequential and range query patterns and tabular and sparse/dense array retrieval.
Scalable out-of-core operations on the data.
Data export and visualization.

Follow cooler development on GitHub.

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