Cov-Lineages (original) (raw)
United States of America 40.0%, United Kingdom 15.0%, China 8.0%, Mexico 5.0%, Germany 3.0%
2019-12-24
3999
10439
One of the two original haplotypes of the pandemic(and first to be discovered)
United States of America 47.0%, Turkey 11.0%, United Kingdom 7.0%, Canada 4.0%, France 3.0%
2020-01-01
46223
115411
A large European lineage the origin of which roughly corresponds to the Northern Italian outbreak early in 2020.
United Kingdom 25.0%, United States of America 15.0%, Russia 6.0%, Japan 6.0%, Turkey 5.0%
2020-01-19
22778
51787
European lineage with 3 clear SNPs `28881GA`,`28882GA`,`28883GC`
United Kingdom 23.0%, United States of America 20.0%, Germany 9.0%, Sweden 6.0%, Denmark 6.0%
2020-01-19
69634
1118968
UK lineage of concern, associated with the N501Y mutation. More information can be found at cov-lineages.org/global_report.html
Brazil 83.0%, Philippines 8.0%, United States of America 3.0%, Paraguay 2.0%, Japan 1.0%
2020-02-10
854
5631
Brazil mostly, absorbed B.1.1.94 and B.1.1.143
Brazil 58.0%, United States of America 25.0%, Chile 3.0%, Argentina 1.0%, Spain 1.0%
2020-04-07
29942
73870
Alias of B.1.1.28.1, Brazilian lineage with a number of spike mutations with likely functional significance E484K, K417T, and N501Y. Described in https://virological.org/t/genomic-characterisation-of-an-emergent-sars-cov-2-lineage-in-manaus-preliminary-findings/586, from #77
United Kingdom 50.0%, Australia 8.0%, Germany 7.0%, United States of America 6.0%, Austria 5.0%
2020-02-24
38
249
Australian lineage
United States of America 34.0%, Germany 13.0%, India 9.0%, Turkey 5.0%, Russia 5.0%
2020-04-14
0
7730
South Africa and Botswana lineage, from #343
United Kingdom 40.0%, United States of America 22.0%, Denmark 6.0%, Germany 4.0%, Brazil 4.0%
2020-06-25
65813
426716
Alias of B.1.1.529.1, from #361
United States of America 47.0%, United Kingdom 19.0%, Germany 7.0%, Canada 4.0%, France 2.0%
2020-01-27
104388
973060
Alias of B.1.1.529.1.1, from #360
United Kingdom 29.0%, Germany 13.0%, Denmark 12.0%, United States of America 11.0%, France 7.0%
2020-03-28
112178
1209386
Alias of B.1.1.529.2, from #361
United States of America 81.0%, Canada 5.0%, United Kingdom 2.0%, Germany 1.0%, Mexico 1.0%
2020-04-15
39743
276706
Alias of B.1.1.529.2.12.1, USA and Canada lineage, from #499
United States of America 24.0%, India 22.0%, United Kingdom 11.0%, Australia 5.0%, Singapore 4.0%
2022-07-20
35
928
Alias of B.1.1.529.2.75.3.4.1.1, mainly found in India, defined by S:346T
Spain 49.0%, United States of America 9.0%, France 7.0%, Canada 5.0%, United Kingdom 5.0%
2023-05-11
45
1264
Alias of B.1.1.529.2.75.3.4.1.1.1.1.1.7.1, S:L455F (G22927T), S:F456L (T22928C), Spain/Austria, from sars-cov-2-variants/lineage-proposals#135
South_Korea 28.0%, Japan 23.0%, United States of America 7.0%, Thailand 6.0%, Denmark 5.0%
2022-01-24
2344
9559
Alias of B.1.1.529.2.75.5.1.2, Singapore/England, E:D72G
South_Africa 34.0%, United States of America 10.0%, Australia 5.0%, Netherlands 5.0%, Germany 4.0%
2023-03-11
28
922
Alias of B.1.1.529.2.86, from #2183
Japan 20.0%, United Kingdom 11.0%, United States of America 9.0%, Denmark 8.0%, France 6.0%
2023-01-03
22
9872
Alias of B.1.1.529.2.86.1, ORF1a:K1973R, mostly with C12815T, mainly Europe, from #2236
United States of America 32.0%, Canada 8.0%, United Kingdom 8.0%, Spain 6.0%, China 4.0%
2020-01-20
3987
102966
Alias of B.1.1.529.2.86.1.1, S:L455S, ORF1a:R3821K, ORF7b:F19L, Europe
United States of America 21.0%, France 17.0%, China 10.0%, Canada 6.0%, United Kingdom 4.0%
2021-07-16
692
22674
Alias of B.1.1.529.2.86.1.1.1, ORF1a:F499L, C11747T, France, from sars-cov-2-variants/lineage-proposals#987
Sweden 29.0%, France 16.0%, United Kingdom 10.0%, United States of America 8.0%, Italy 6.0%
2023-09-25
24
588
Alias of B.1.1.529.2.86.1.1.1.1, S:T572I on C9142T branch, France/Sweden/Poland, from sars-cov-2-variants/lineage-proposals#1097
Japan 23.0%, Sweden 20.0%, United Kingdom 14.0%, France 13.0%, United States of America 8.0%
2023-11-04
68
71
Alias of B.1.1.529.2.86.1.1.1.3, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
Brazil 27.0%, United States of America 26.0%, Japan 8.0%, France 7.0%, South_Africa 4.0%
2023-01-29
43
407
Alias of B.1.1.529.2.86.1.1.1.5, S:R346T on C9142T branch, from #2492
United States of America 43.0%, Canada 21.0%, South_Korea 7.0%, Japan 6.0%, Australia 4.0%
2024-01-06
10
672
Alias of B.1.1.529.2.86.1.1.1.5.1, S:F456L (22928C), after C28498T, from sars-cov-2-variants/lineage-proposals#1253
United States of America 47.0%, Canada 37.0%, Greece 4.0%, United Kingdom 3.0%, Sweden 1.0%
2023-01-03
43
2421
Alias of B.1.1.529.2.86.1.1.2, S:M1229I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1087
United States of America 29.0%, Netherlands 9.0%, Switzerland 7.0%, Canada 6.0%, United Kingdom 5.0%
2023-03-04
23
456
Alias of B.1.1.529.2.86.1.1.3, ORF8:Q18*, Netherlands
United States of America 44.0%, Canada 8.0%, South_Korea 7.0%, United Kingdom 5.0%, Denmark 4.0%
2023-02-14
129
45080
Alias of B.1.1.529.2.86.1.1.4, ORF1a:T170I, Denmark/Singapore, from #2381
United States of America 84.0%, South_Korea 4.0%, Canada 3.0%, Puerto_Rico 2.0%, United Kingdom 1.0%
2023-11-17
387
1246
Alias of B.1.1.529.2.86.1.1.4.2, S:N185D, after T18453C, USA, from #2462
United States of America 64.0%, Canada 9.0%, United Kingdom 8.0%, China 4.0%, Australia 2.0%
2023-11-14
36
400
Alias of B.1.1.529.2.86.1.1.4.3, S:T572I, USA, from #2487
United States of America 86.0%, Canada 6.0%, United Kingdom 4.0%, Puerto_Rico 1.0%, Poland 1.0%
2024-01-04
64
872
Alias of B.1.1.529.2.86.1.1.4.3.1, S:R346T, USA from #2487
Singapore 26.0%, China 16.0%, Japan 10.0%, South_Korea 10.0%, United States of America 9.0%
2023-10-30
539
2935
Alias of B.1.1.529.2.86.1.1.5, ORF1b:V1271T, Singapore/Malaysia/Indonesia, from #2419
United States of America 57.0%, Switzerland 6.0%, France 5.0%, Canada 5.0%, China 5.0%
2023-10-11
141
1224
Alias of B.1.1.529.2.86.1.1.6, G22627A
Sweden 47.0%, United States of America 20.0%, United Kingdom 17.0%, Spain 4.0%, Germany 4.0%
2023-11-26
34
275
Alias of B.1.1.529.2.86.1.1.6.1, S:R346T, Sweden, from sars-cov-2-variants/lineage-proposals#1089
United States of America 47.0%, United Kingdom 14.0%, Canada 10.0%, Spain 4.0%, Ireland 3.0%
2022-10-18
66
8276
Alias of B.1.1.529.2.86.1.1.7, S:T572I, S:E1150D, USA/France, from sars-cov-2-variants/lineage-proposals#1097
United Kingdom 75.0%, United States of America 10.0%, New_Zealand 3.0%, Portugal 3.0%, Ireland 2.0%
2023-12-31
21
220
Alias of B.1.1.529.2.86.1.1.7.1, S:R346K, England, from sars-cov-2-variants/lineage-proposals#1371
United States of America 38.0%, Canada 18.0%, Chile 10.0%, United Kingdom 9.0%, Argentina 5.0%
2023-12-09
110
861
Alias of B.1.1.529.2.86.1.1.7.2, ORF1b:C1563F, Americas
United States of America 37.0%, United Kingdom 15.0%, Spain 7.0%, Canada 7.0%, France 4.0%
2023-02-26
110
1965
Alias of B.1.1.529.2.86.1.1.8, ORF7a:T28I
United States of America 72.0%, Canada 16.0%, United Kingdom 2.0%, Japan 1.0%, Spain 1.0%
2023-02-26
96
3869
Alias of B.1.1.529.2.86.1.1.8.1, S:T572I, after A12928G, USA/Denmark, from sars-cov-2-variants/lineage-proposals#1097
United States of America 43.0%, Spain 10.0%, United Kingdom 9.0%, Canada 8.0%, Puerto_Rico 5.0%
2023-10-03
238
3424
Alias of B.1.1.529.2.86.1.1.9, S:Q183H, USA/UK/Canada, from #2410
United Kingdom 63.0%, Australia 7.0%, New_Zealand 7.0%, Ireland 5.0%, Canada 5.0%
2023-12-04
26
350
Alias of B.1.1.529.2.86.1.1.9.1, S:T572I, ORF1a:A3143V, from sars-cov-2-variants/lineage-proposals#1097
United States of America 19.0%, Spain 10.0%, Canada 10.0%, Germany 9.0%, United Kingdom 8.0%
2023-11-07
29
159
Alias of B.1.1.529.2.86.1.1.10, S:T95I, USA/Canada, from sars-cov-2-variants/lineage-proposals#1135
United States of America 30.0%, India 12.0%, Italy 12.0%, Spain 11.0%, Japan 7.0%
2023-12-07
2
1114
Alias of B.1.1.529.2.86.1.1.11, S:V1104L, G17334T, India, from #2446
United States of America 25.0%, Canada 16.0%, Spain 10.0%, United Kingdom 9.0%, Japan 9.0%
2023-08-11
17
93253
Alias of B.1.1.529.2.86.1.1.11.1, S:F456L (T22928C), after ORF1a:T2283I, India, from sars-cov-2-variants/lineage-proposals#1253
United States of America 39.0%, Canada 11.0%, Australia 7.0%, New_Zealand 7.0%, United Kingdom 6.0%
2023-12-30
28
915
Alias of B.1.1.529.2.86.1.1.11.1.1, S:K1086R, from sars-cov-2-variants/lineage-proposals#1364
United States of America 44.0%, Canada 11.0%, Singapore 7.0%, United Kingdom 7.0%, Australia 3.0%
2024-01-27
8
11925
Alias of B.1.1.529.2.86.1.1.11.1.1.1, S:R346T, from sars-cov-2-variants/lineage-proposals#1089
United States of America 44.0%, Canada 11.0%, United Kingdom 9.0%, Singapore 7.0%, France 3.0%
2023-07-05
7
33354
Alias of B.1.1.529.2.86.1.1.11.1.2, S:R346T on JN.1.11.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089
Italy 24.0%, South_Korea 22.0%, United States of America 18.0%, Poland 7.0%, Ireland 7.0%
2023-11-26
11
45
Alias of B.1.1.529.2.86.1.1.12, S:F456V, ORF7a:A8T, from sars-cov-2-variants/lineage-proposals#1253
United States of America 32.0%, Sweden 15.0%, Canada 9.0%, Russia 8.0%, United Kingdom 7.0%
2023-12-10
21
171
Alias of B.1.1.529.2.86.1.1.13, S:A1087S, after C26894T, C25680T, USA, from #2464
United States of America 38.0%, Canada 14.0%, Russia 12.0%, United Kingdom 7.0%, France 5.0%
2023-12-07
241
6189
Alias of B.1.1.529.2.86.1.1.13.1, S:R346T, S:F59S, USA, from sars-cov-2-variants/lineage-proposals/issues/1386
United States of America 31.0%, Ecuador 14.0%, Spain 11.0%, United Kingdom 8.0%, Australia 5.0%
2023-11-09
50
731
Alias of B.1.1.529.2.86.1.1.15, S:A688V
United States of America 36.0%, Canada 12.0%, China 7.0%, United Kingdom 6.0%, Spain 6.0%
2023-07-14
47
35192
Alias of B.1.1.529.2.86.1.1.16, S:F456L (T22928C), from sars-cov-2-variants/lineage-proposals#1253
United States of America 32.0%, United Kingdom 10.0%, Canada 8.0%, France 4.0%, Japan 4.0%
2023-01-03
134
6497
Alias of B.1.1.529.2.86.1.1.18, S:R346T, directly on JN.1 polytomy, from sars-cov-2-variants/lineage-proposals#1089
United States of America 30.0%, Netherlands 10.0%, United Kingdom 10.0%, Denmark 10.0%, Russia 8.0%
2023-10-02
715
1598
Alias of B.1.1.529.2.86.1.1.19, ORF8:I71V
South_Korea 43.0%, China 13.0%, United States of America 13.0%, Australia 6.0%, Canada 4.0%
2023-01-02
66
1179
Alias of B.1.1.529.2.86.1.1.20, S:S31F, directly on JN.1 polytomy
Canada 32.0%, United States of America 22.0%, United Kingdom 8.0%, Spain 4.0%, Belgium 4.0%
2023-10-22
1541
3104
Alias of B.1.1.529.2.86.1.1.22, ORF1a:S505F, C13019T, from #2465
Brazil 72.0%, United States of America 16.0%, Canada 3.0%, South_Korea 3.0%, Portugal 2.0%
2024-01-01
48
270
Alias of B.1.1.529.2.86.1.1.23, S:K444R, S:Y453F, ORF1a:A307V, ORF1a:P2144L, Brazil, from #2488
United States of America 55.0%, United Kingdom 10.0%, Costa_Rica 5.0%, Spain 5.0%, Israel 4.0%
2023-11-10
117
189
Alias of B.1.1.529.2.86.1.1.24, S:C1243F, USA
United States of America 31.0%, United Kingdom 31.0%, India 19.0%, Canada 12.0%, Netherlands 6.0%
2023-12-17
16
52
Alias of B.1.1.529.2.86.1.1.25.1, S:R346T, India
Sweden 34.0%, United Kingdom 16.0%, Canada 12.0%, United States of America 8.0%, Japan 5.0%
2022-10-22
111
3986
Alias of B.1.1.529.2.86.1.2, ORF1a:Y621C, Europe/North America, from #2284
Netherlands 43.0%, Germany 12.0%, Turkey 10.0%, United Kingdom 6.0%, Sweden 5.0%
2023-10-27
41
129
Alias of B.1.1.529.2.86.1.2.2, S:T572I, N:G25C, ORF1a:L3644F, Netherlands, from #2433
United Kingdom 47.0%, United States of America 9.0%, Lithuania 8.0%, Denmark 7.0%, Finland 4.0%
2023-09-12
36
721
Alias of B.1.1.529.2.86.1.6, S:V193L
Japan 34.0%, Denmark 18.0%, United States of America 13.0%, South_Korea 8.0%, Singapore 6.0%
2023-04-12
78
384
Alias of B.1.1.529.2.86.1.11, S:V1104L, Asia, from sars-cov-2-variants/lineage-proposals#1303
South_Africa 57.0%, Canada 13.0%, United Kingdom 13.0%, United States of America 7.0%, Netherlands 3.0%
2023-09-28
5
101
Alias of B.1.1.529.2.86.3.2, S:R346T, G2944A, South Africa, from #2505
United States of America 60.0%, Canada 7.0%, United Kingdom 6.0%, France 3.0%, Denmark 3.0%
2020-02-02
1179
53217
Alias of B.1.1.529.4.6, mainly found in USA, England and Denmark, from #741
United States of America 18.0%, Germany 11.0%, France 10.0%, United Kingdom 10.0%, Denmark 7.0%
2020-03-14
23500
229728
Alias of B.1.1.529.5.1, Portugal lineage
Brazil 86.0%, Chile 5.0%, Spain 5.0%, Italy 2.0%, Peru 2.0%
2022-05-13
29
44
Alias of B.1.1.529.5.1.14, mainly found in Brazil
France 52.0%, Germany 10.0%, United States of America 5.0%, Denmark 4.0%, Belgium 4.0%
2021-11-15
801
1963
Alias of B.1.1.529.5.1.17, France lineage
Japan 18.0%, United States of America 17.0%, Germany 7.0%, United Kingdom 6.0%, Russia 5.0%
2020-07-02
10665
279184
Alias of B.1.1.529.5.2, mainly found in South Africa, England and USA, from #551
Germany 21.0%, United States of America 10.0%, Canada 10.0%, Belgium 8.0%, United Kingdom 8.0%
2022-03-11
1973
2230
Alias of B.1.1.529.5.2.1.7.21, C28603T
United States of America 64.0%, Canada 8.0%, Japan 7.0%, Germany 4.0%, Sweden 3.0%
2022-06-09
36
2614
Alias of B.1.1.529.5.2.1.13, mainly found in USA, from #883
Chile 64.0%, Canada 12.0%, United States of America 12.0%, Austria 3.0%, Australia 2.0%
2022-07-27
99
777
Alias of B.1.1.529.5.2.1.31.1, Chile, S:A701V and S:S247N/S:Y248-
United States of America 84.0%, United Kingdom 3.0%, Spain 3.0%, Japan 2.0%, Canada 2.0%
2021-11-30
195
3159
Alias of B.1.1.529.5.3.1.1.1.1.1.1.32 found mainly in USA, S:153I, S:144-, from #1402
United States of America 98.0%, Germany 1.0%, Sweden 1.0%
2022-11-26
50
106
Alias of B.1.1.529.5.3.1.1.1.1.1.1.32.3 USA, S:L176F
United States of America 76.0%, Canada 5.0%, United Kingdom 3.0%, Japan 2.0%, Germany 2.0%
2022-08-01
2379
4353
Alias of B.1.1.529.5.3.1.1.1.1.1.3.2, ORF1a:L1853F, USA
United States of America 24.0%, Canada 22.0%, Germany 11.0%, United Kingdom 11.0%, France 7.0%
2022-09-26
12
861
Alias of B.1.1.529.5.3.1.1.1.1.1.22, Canada, S:R346T after C26681T
Germany 39.0%, United States of America 9.0%, United Kingdom 8.0%, Denmark 6.0%, France 4.0%
2022-01-24
217
8966
Alias of B.1.1.529.5.9, mainly found in Germany, Switzerland and Denmark, from #753