Spatial transcriptome analyses of Nanostring's DSP data in R (original) (raw)
standR 0.99.12
standR: spatial transcriptomics analyses and decoding in R
The standR package provides a series of functions to assist different stages of the analysis of spatial transcriptomics data generated from the Nanostring’s GeoMX DSP platforms. Most functions in the package is based on the infrastructure SpatialExperiment, see detialshere.
See full guide at HERE
Overall workflow
Example data
The published GeoMX WTA data of diabetic kidney disease that we used in the vignette is available here.