dblp: BIBE 2006 (original) (raw)

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6th BIBE 2006: Arlington, Virginia, USA

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  • Session 1 : Protein Structure, Function, and Classification
  • Session 2 : Pattern Discovery and Data Mining
  • Session 3: Microarrays
  • Session 4: Sequence Alignment and Database Search
  • Session 5: Phylogenies, Trees, and Visualization
  • Session 6: DNA & RNA Sequence and Structure
  • Session 7: Clustering, Similarity Metrics, and Near Neighbor Methods
  • Session 8: Regulatory and Metabolic Networks and Bioengineering I
  • Session 9: Bioengineering II

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  Sixth IEEE International Symposium on BioInformatics and BioEngineering (BIBE 2006), 16-18 October 2006, Arlington, Virginia, USA. IEEE Computer Society 2006, ISBN 0-7695-2727-2

Session 1 : Protein Structure, Function, and Classification

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  Mary Qu Yang, Jack Y. Yang:
  IUP: Intrinsically Unstructured Protein predictor - A software tool for analyzing polypeptide sequences. 3-11
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  Xiaodan Zhang, Daniel Duanqing Wu, Xiaohua Zhou, Xiaohua Hu:
  A Language Modeling Text Mining Approach to the Annotation of Protein Community. 12-19
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  Bernard Chen, Phang C. Tai, Robert W. Harrison, Yi Pan:
  FIK Model: Novel Efficient Granular Computing Model for Protein Sequence Motifs and Structure Information Discovery. 20-26
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  Weijia Xu, Rui Mao, Shu Wang, Daniel P. Miranker:
  On Integrating Peptide Sequence Analysis and Relational Distance-Based Indexing. 27-34
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  Jack Y. Yang, Mary Qu Yang:
  Assessing protein function using a combination of supervised and unsupervised learning. 35-44

Session 2 : Pattern Discovery and Data Mining

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  Di Wang, Guoren Wang, Qingquan Wu, Baichen Chen, Changyong Yu, Yi Zhao, Ge Yu:
  Partition Frequency Distance based Filter Method for Finding Approximate Repetitions in DNA Sequences. 45-52
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  Kang Ning, Hoong Kee Ng, Hon Wai Leong:
  Finding Patterns in Biological Sequences by Longest Common Subsequencesand Shortest Common Supersequences. 53-60
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  Wei Peng, Tao Li, Giri Narasimhan:
  Mining the Database of Transcription Binding Sites. 61-64
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  Jaime I. Dávila, Sanguthevar Rajasekaran:
  Extending Pattern Branching to Handle Challenging Instances. 65-69
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  Henry C. M. Leung, Francis Y. L. Chin:
  Discovering DNA Motifs with Nucleotide Dependency. 70-80

Session 3: Microarrays

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  Kaushik Sinha, Ruoming Jin, Gagan Agrawal, Helen Piontkivska:
  Exploratory Tools for Follow­Up Studies to Microarray Experiments. 81-85
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  Yuhai Zhao, Guoren Wang, Ying Yin, Ge Yu:
  Mining Positive and Negative Co-regulation Patterns from Microarray Data. 86-93
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  Youngmi Yoon, Jongchan Lee, Sanghyun Park:
  Building a Classifier for Integrated Microarray Datasets through Two-Stage Approach. 94-102
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  Wei Peng, Tao Li:
  IntClust: A Software Package for Clustering Replicated Microarray Data. 103-109
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  Liping Ji, Kenneth Wei-Liang Mock, Kian-Lee Tan:
  Quick Hierarchical Biclustering on Microarray Gene Expression Data. 110-120

Session 4: Sequence Alignment and Database Search

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  Abdullah N. Arslan, Dan He:
  An improved algorithm for the regular expression constrained multiple sequence alignment problem. 121-126
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  Perry G. Ridge, Hyrum Carroll, Dan Sneddon, Mark J. Clement, Quinn Snell:
  Large Grain Size Stochastic Optimization Alignment. 127-134
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  Qiang Xue, James R. Cole, Sakti Pramanik:
  Sequence Homology Search Based on Database Indexing Using the Profile Hidden Markov Model. 135-140
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  Xuan Zhang, Gagan Agrawal:
  A Tool for Supporting Integration Across Multiple Flat­File Datasets. 141-148
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  Rimon Mikhaiel, Guohui Lin, Eleni Stroulia:
  Simplicity in RNA Secondary Structure Alignment: Towards biologically plausible alignments. 149-158

Session 5: Phylogenies, Trees, and Visualization

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  Usman Roshan, Dennis R. Livesay, Satish Chikkagoudar:
  Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees. 159-164
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  Yuanjian Feng, Zuyi Wang, Yitan Zhu, Jianhua Xuan, David J. Miller:
  Learning the Tree of Phenotypes Using Genomic Data and VISDA. 165-170
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  Margaret H. Dunham, Donya Quick, Yuhang Wang, Monnie McGee, Jim Waddle:
  Visualization of DNA/RNA Structure using Temporal CGRs. 171-178
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  Douglas W. Raiford, Dan E. Krane, Travis E. Doom, Michael L. Raymer:
  Isolation and Visualization of Codon Usage Biases. 179-183
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  Daniel A. Keim, Daniela Oelke, Royal Truman, Klaus Neuhaus:
  Finding Correlations in Functionally Equivalent Proteins by Integrating Automated and Visual Data Exploration. 183-192
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  Bing Bing Zhou, Monther Tarawneh, Penghao Wang, Daniel Chu, Chen Wang, Albert Y. Zomaya, Richard P. Brent:
  Evidence of Multiple Maximum Likelihood Points for a Phylogenetic Tree. 193-200

Session 6: DNA & RNA Sequence and Structure

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  Xiaoming Wu, Jason Tsong-Li Wang, Katherine G. Herbert:
  A New Kernel Method for RNA Classification. 201-208
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  Mugdha Khaladkar, Vivian Bellofatto, Jason T. L. Wang, Bin Tian, Kaizhong Zhang:
  RADAR: An InteractiveWeb-Based Toolkit for RNA Data Analysis and Research. 209-212
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  Sridhar Ramachandran, Travis E. Doom, Michael L. Raymer, Dan E. Krane:
  Parsimony approach to test the Evolving Master Gene hypothesis for human Alu repeats. 213-219
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  Abdullah N. Arslan:
  An algorithm for string edit distance allowing substring reversals. 220-226
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  Young Bun Kim, Jean Gao:
  Unsupervised Gene Selection For High Dimensional Data. 227-234

Session 7: Clustering, Similarity Metrics, and Near Neighbor Methods

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  Zhipeng Cai, Lizhe Xu, Yi Shi, Mohammad R. Salavatipour, Randy Goebel, Guohui Lin:
  Using Gene Clustering to Identify Discriminatory Genes with Higher Classification Accuracy. 235-242
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  Yongyang Huo, Francisco Azuaje, Paul J. McCullagh, Roy Harper:
  Semi-Supervised Clustering Models for Clinical Risk Assessment. 243-250
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  Chuan Lin, Daxin Jiang, Aidong Zhang:
  Prediction of Protein Function Using Common-Neighbors in Protein-Protein Interaction Networks. 251-260
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  Elinor Velasquez, Emmanuel R. Yera, Rahul Singh:
  Determining Molecular Similarity for Drug Discovery using the Wavelet Riemannian Metric. 261-268
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  Xuan Zhang, Ruoming Jin, Gagan Agrawal:
  Assigning Schema Labels Using Ontology And Hueristics. 269-280

Session 8: Regulatory and Metabolic Networks and Bioengineering I

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  Osman Abul, Reda Alhajj, Faruk Polat:
  Optimal Multi-Objective Control Method for Discrete Genetic Regulatory Networks. 281-284
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  Zachary M. Saul, Vladimir Filkov:
  Methods for Random Modularization of Biological Networks. 285-288
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  Young-Rae Cho, Woochang Hwang, Aidong Zhang:
  Efficient Modularization of Weighted Protein Interaction Networks using k-Hop Graph Reduction. 289-298
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  Dong-Guk Shin, John Bluis, Yoo Ah Kim, Winfried Krueger, Jeffrey Maddox, Ravi Nori, Nathan Viniconis, Hsin-Wei Wang, Alan Wong, David W. Rowe:
  A Computational Inference Framework for analyzing Gene Regulation Pathway using Microarray Data. 299-306
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  Xiang Xiao, Malika Mahoui, Zina Ben-Miled, B. Choudhury:
  The Automation of SIBIOS Workflow Composition. 307-314

Session 9: Bioengineering II

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  Hisham Al-Mubaid, Hoa A. Nguyen:
  Using MEDLINE as Standard Corpus for Measuring Semantic Similarity in the Biomedical Domain. 315-318
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  Lothar Richter, Stefan Hechtl, Stefan Kramer:
  Leveraging Chemical Background Knowledge for the Prediction of Growth Inhibition. 319-324
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  Marisol Giardina, Francisco Azuaje, Paul J. McCullagh, Roy Harper:
  A Supervised Learning Approach to Predicting Coronary Heart Disease Complications in Type 2 Diabetes Mellitus Patients. 325-331
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  Jung Hun Oh, Animesh Nandi, Prem Gurnani, Peter Bryant-Greenwood, Kevin P. Rosenblatt, Jean Gao:
  Prediction of labor for pregnant women using high-resolution mass spectrometry data. 332-339
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  Yi Zhu, Tong Lee Chen, Wanping Zhang, Tzyy-Ping Jung, Jeng-Ren Duann, Scott Makeig, Chung-Kuan Cheng:
  Noninvasive Study of the Human Heart using Independent Component Analysis. 340-347
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  Anna Esposito, Nikolaos G. Bourbakis:
  The Role of Timing in Speech Perception and Speech Production Processes and its Effects on Language Impaired Individuals. 348-356
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  Nikolaos G. Bourbakis, Anna Esposito, Despina Kavraki:
  Analysis of Invariant Meta-features for Learning and Understanding Disable People's Emotional Behavior Related to Their Health Conditions: A Case Study. 357-369

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