Genomics, Proteomics & Bioinformatics, Volume 8 (original) (raw)

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Volume 8, Number 1, March 2010

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    Lijun Zhang, Xiaojun Zhang, Qing Ma, Honghao Zhou:
    Host Proteome Research in HIV Infection. 1-9
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    Lei Wang, Lan Jiang, Songnian Hu, Yejun Wang:
    Characterization of Evolutionarily Conserved MicroRNAs in Amphioxus. 10-21
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    Vladislav Victorovich Khrustalev, Eugene Victorovich Barkovsky:
    Study of Completed Archaeal Genomes and Proteomes: Hypothesis of Strong Mutational AT Pressure Existed in Their Common Predecessor. 22-32
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    Yupeng Zhao, Yen-Han Lin:
    Whole-Cell Protein Identification Using the Concept of Unique Peptides. 33-41
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    Shriparna Dutt, Vinay Kumar Singh, Soma S. Marla, Anil Kumar:
    In silico Analysis of Sequential, Structural and Functional Diversity of Wheat Cystatins and Its Implication in Plant Defense. 42-56
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    Guillaume Brysbaert, François-Xavier Pellay, Sebastian Noth, Arndt Benecke:
    Quality Assessment of Transcriptome Data Using Intrinsic Statistical Properties. 57-71
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    Jianing Geng, Kexin Li, Yanming Zhang, Songnian Hu:
    A Modified Enrichment Method to Construct Microsatellite Library from Plateau Pika Genome (Ochotona curzoniae). 72-76
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    Dapeng Wang, Yubin Zhang, Zhang Zhang, Jiang Zhu, Jun Yu:
    KaKs_Calculator 2.0: A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies. 77-80

Volume 8, Number 2, June 2010

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    Ximiao He, Shu Tao, Jing Jin, Songnian Hu, Jun Yu:
    The Most Redundant Sequences in Human CpG Island Library Are Derived from Mitochondrial Genome. 81-91
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    Kaifu Chen, Lei Wang, Meng Yang, Jiucheng Liu, Chengqi Xin, Songnian Hu, Jun Yu:
    Sequence Signatures of Nucleosome Positioning in Caenorhabditis elegans. 92-102
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    Aylan Farid Arenas, Juan Felipe Osorio-Méndez, Andres Julian Gutierrez, Jorge E. Gomez-Marin:
    Genome-Wide Survey and Evolutionary Analysis of Trypsin Proteases in Apicomplexan Parasites. 103-112
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    G. R. Prabu, Abul Kalam Azad Mandal:
    Computational Identification of miRNAs and Their Target Genes from Expressed Sequence Tags of Tea (Camellia sinensis). 113-121
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    Bhuvan Molparia, Kanav Goyal, Anita Sarkar, Sonu Kumar, Durai Sundar:
    ZiF-Predict: A Web Tool for Predicting DNA-Binding Specificity in C2H2 Zinc Finger Proteins. 122-126
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    Jayavel Sridhar, Govindaraj Sowmiya, Kanagaraj Sekar, Ziauddin Ahamed Rafi:
    PsRNA: A Computing Engine for the Comparative Identification of Putative Small RNA Locations within Intergenic Regions. 127-134
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    João M. G. C. F. de Almeida:
    BiDiBlast: Comparative Genomics Pipeline for the PC. 135-138

Volume 8, Number 3, September 2010

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    Lijun Zhang, Xiaojun Zhang, Qing Ma, Fang Ma, Honghao Zhou:
    Transcriptomics and Proteomics in the Study of H1N1 2009. 139-144
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    Amrutlal K. Patel, Doug Olson, Suresh K. Tikoo:
    Proteomic Analysis of Bovine Nucleolus. 145-158
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    Wilfred R. Cuff, Venkata R. S. K. Duvvuri, Binhua Liang, Bhargavi Duvvuri, Gillian E. Wu, Jianhong Wu, Raymond S. W. Tsang:
    A Novel Interpretation of Structural Dot Plots of Genomes Derived from the Analysis of Two Strains of Neisseria meningitidis. 159-169
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    Linghu Nie, Meghna Das Thakur, Yumei Wang, Qin Su, Yongliang Zhao, Yunfeng Feng:
    Regulation of U6 Promoter Activity by Transcriptional Interference in Viral Vector-Based RNAi. 170-179
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    Ronen Shemesh, Amit Novik, Yossi Cohen:
    Follow the Leader: Preference for Specific Amino Acids Directly Following the Initial Methionine in Proteins of Different Organisms. 180-189
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    Parveen Salahuddin, Asad U. Khan:
    Structural and Functional Analysis of NS1 and NS2 Proteins of H1N1 Subtype. 190-199
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    Ferran Reverter, Esteban Vegas, Pedro Sánchez:
    Mining Gene Expression Profiles: An Integrated Implementation of Kernel Principal Component Analysis and Singular Value Decomposition. 200-210

Volume 8, Number 4, December 2010

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    Jun Wang, Jianguo Zhang, Ruiqiang Li, Hongkun Zheng, Jun Li, Yong Zhang, Heng Li, Peixiang Ni, Songgang Li, Shengting Li, Jingqiang Wang, Dongyuan Liu, Jason E. McDermott, Ram Samudrala, Siqi Liu, Jian Wang, Huanming Yang, Jun Yu, Gane Ka-Shu Wong:
    Evolutionary Transients in the Rice Transcriptome. 211-228
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    Wanfei Liu, Dawei Huang, Kan Liu, Songnian Hu, Jun Yu, Gang Gao, Shuhui Song:
    Discovery, Identification and Comparative Analysis of Non-Specific Lipid Transfer Protein (nsLtp) Family in Solanaceae. 229-237
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    Yunfeng Feng, Linghu Nie, Meghna Das Thakur, Qin Su, Zhenfen Chi, Yongliang Zhao, Gregory D. Longmore:
    A Multifunctional Lentiviral-Based Gene Knockdown with Concurrent Rescue that Controls for Off-Target Effects of RNAi. 238-245
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    Amineni Umamaheswari, Dibyabhaba Pradhan, Marisetty Hemanthkumar:
    Identification of Potential Leptospira Phosphoheptose Isomerase Inhibitors Through Virtual High-Throughput Screening. 246-255
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    Libin Deng, Xiaoli Tang, Wei Chen, Jiari Lin, Zhiqing Lai, Zuoqi Liu, Dake Zhang:
    Scanning for Genomic Regions Subject to Selective Sweeps Using SNP-MaP Strategy. 256-261
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    Guanghong Zuo, Zhao Xu, Hongjie Yu, Bailin Hao:
    Jackknife and Bootstrap Tests of the Composition Vector Trees. 262-267
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    Changzheng Dong:
    SNPTransformer: A Lightweight Toolkit for Genome-Wide Association Studies. 268-273

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