Journal of Integrative Bioinformatics, Volume 9 (original) (raw)

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Volume 9, Number 1, 2012

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    Dennis Trede, Jan Hendrik Kobarg, Janina Oetjen, Herbert Thiele, Peter Maass, Theodore Alexandrov:
    On the Importance of Mathematical Methods for Analysis of MALDI-Imaging Mass Spectrometry Data.
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    Ezio Bartocci, Diletta Cacciagrano, Maria Rita Di Berardini, Emanuela Merelli, Leonardo Vito:
    UBioLab: a web-LABoratory for Ubiquitous in-silico experiments.
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    Jinlu Cai, Henry L. Keen, Curt D. Sigmund, Thomas L. Casavant:
    Coex-Rank: An approach incorporating co-expression information for combined analysis of microarray data.
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    Hossein Rahmani, Hendrik Blockeel, Andreas Bender:
    Predicting Genes Involved in Human Cancer Using Network Contextual Information.

Volume 9, Number 2, 2012

Special Issue: 7th International Symposium on Integrative Bioinformatics, Hangzhou, China, 2012

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    Hendrik Mehlhorn, Matthias Lange, Uwe Scholz, Falk Schreiber:
    IDPredictor: predict database links in biomedical database.
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    Christian Klukas, Jean-Michel Pape, Alexander Entzian:
    Analysis of high-throughput plant image data with the information system IAP.
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    Jia Wei, Ming Chen:
    Oncology In Vivo Data Integration for Hypothesis Generation.
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    Xiujun Gong, Hua Yu, Chun-Bai Yang, Yuan-Fang Li:
    Knowledge Enrichment Analysis for Human Tissue-Specific Genes Uncover New Biological Insights.
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    Mohd Azrul Hisham Mohd Adib, Mohd Fadhlan Yusof, Zulkifli Ahmad, Nur Hazreen Mohd Hasni:
    Detection of Cardiac Geometry via Difference Intensity of Echocardiogram Images.
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    Katrin Lotz, Falk Schreiber, Röbbe Wünschiers:
    Nutrilyzer: A Tool for Deciphering Atomic Stoichiometry of Differentially Expressed Paralogous Proteins.
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    Peng Sun, Jiong Guo, Jan Baumbach:
    Integrated simultaneous analysis of different biomedical data types with exact weighted bi-cluster editing.
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    Shikui Tu, Runsheng Chen, Lei Xu:
    Transcription Network Analysis by A Sparse Binary Factor Analysis Algorithm.
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    Jie Cheng, Joel Greshock, Jeffery Painter, Xiwu Lin, Kwan Lee, Shu Zheng, Alan Menius:
    Predicting breast cancer chemotherapeutic response using a novel tool for microarray data analysis.
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    Yuriy L. Orlov, Han Xu, Dmitry A. Afonnikov, Bing Lim, Jian-Chien Heng, Ping Yuan, Ming Chen, Junli Yan, Neil D. Clarke, Nina Orlova, Mikael Huss, Konstantin V. Gunbin, Nikolay Podkolodnyy, Huck-Hui Ng:
    Computer and Statistical Analysis of Transcription Factor Binding and Chromatin Modifications by ChIP-seq data in Embryonic Stem Cell.
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    Keith Flanagan, Sirintra Nakjang, Jennifer Hallinan, Colin Harwood, Robert P. Hirt, Matthew R. Pocock, Anil Wipat:
    Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud.
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    Xiaogang Wu, Hui Huang, Tao Wei, Ragini Pandey, Christoph Reinhard, Shuyu D. Li, Jake Y. Chen:
    Network Expansion and Pathway Enrichment Analysis towards Biologically Significant Findings from Microarrays.

Volume 9, Number 3, 2012

Special Issue: Selected extended papers of the 6th International Conference on Practical Applications of Computational Biology and Bioinformatics, Salamanca, Spain, 2012

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    Diego Calvo-Dmgz, Juan F. Gálvez, Daniel Glez-Peña, Silvana Gómez-Meire, Florentino Fdez-Riverola:
    Using Variable Precision Rough Set for Selection and Classification of Biological Knowledge Integrated in DNA Gene Expression.
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    David Reboiro-Jato, Miguel Reboiro-Jato, Florentino Fdez-Riverola, Cristina P. Vieira, Nuno A. Fonseca, Jorge Vieira:
    ADOPS - Automatic Detection Of Positively Selected Sites.
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    Paulo Gaspar, Jaime G. Carbonell, José Luís Oliveira:
    On the parameter optimization of Support Vector Machines for binary classification.
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    Sara Correia, Miguel Rocha:
    In silico strain optimization by adding reactions to metabolic models.
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    Ana Margarida Sousa, Andreia Ferreira, Nuno F. Azevedo, Maria Olívia Pereira, Anália Lourenço:
    Computational approaches to standard-compliant biofilm data for reliable analysis and integration.
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    Augusto Ramoa, Salomé Maia, Anália Lourenço:
    A Rational Framework for Production Decision Making in Blood Establishments.
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    Luis Fernando Castillo, Narmer Galeano-Vanegas, Gustavo A. Isaza, Álvaro Gaitán-Bustamante:
    Construction of coffee transcriptome networks based on gene annotation semantics.
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    Roberto González, Carolina Zato, Rocío Benito, Javier Bajo, Jesús M. Hernández, Juan Francisco de Paz, Vicente Vera, Juan M. Corchado:
    Automatic knowledge extraction in sequencing analysis with multiagent system and grid computing.
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    André Valério Carreiro, Artur J. Ferreira, Mário A. T. Figueiredo, Sara Cordeiro Madeira:
    Towards a Classification Approach using Meta-Biclustering: Impact of Discretization in the Analysis of Expression Time Series.

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