dblp: Neuroinformatics, Volume 21 (original) (raw)



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Volume 21, Number 1, January 2023

John Darrell Van Horn:
Editorial: What the New White House Rules on Equitable Access Mean for the Neurosciences. 1-4

Hongjie Cai, Aojie Li, Guangjun Yu, Xiujun Yang, Manhua Liu
:
Brain Age Prediction in Developing Childhood with Multimodal Magnetic Resonance Images. 5-19

Tommaso Di Noto
, Guillaume Marie, Sébastien Tourbier
, Yasser Alemán-Gómez
, Oscar Esteban
, Guillaume Saliou, Meritxell Bach Cuadra, Patric Hagmann
, Jonas Richiardi
:
Towards Automated Brain Aneurysm Detection in TOF-MRA: Open Data, Weak Labels, and Anatomical Knowledge. 21-34

Kevin Teh
, Paul A. Armitage, Solomon Tesfaye
, Dinesh Selvarajah
:
Deep Learning Classification of Treatment Response in Diabetic Painful Neuropathy: A Combined Machine Learning and Magnetic Resonance Neuroimaging Methodological Study. 35-43

Jasmine A. Moore
, Anup Tuladhar
, Zahinoor Ismail, Pauline Mouches
, Matthias Wilms, Nils D. Forkert:
Dementia in Convolutional Neural Networks: Using Deep Learning Models to Simulate Neurodegeneration of the Visual System. 45-55

Juan Miguel Valverde
, Artem Shatillo, Riccardo de Feo
, Jussi Tohka:
Automatic Cerebral Hemisphere Segmentation in Rat MRI with Ischemic Lesions via Attention-based Convolutional Neural Networks. 57-70

Stavros I. Dimitriadis
:
Assessing the Repeatability of Multi-Frequency Multi-Layer Brain Network Topologies Across Alternative Researcher's Choice Paths. 71-88

Stephanie O. M. Dyke, Kathleen Connor, Victoria Nembaware, Nchangwi S. Munung
, Kathy Reinold, Giselle Kerry, Mamana Mbiyavanga, Lyndon Zass
, Mauricio Moldes, Samir Das, John Mike Davis, Jordi Rambla De Argila, J. Dylan Spalding, Alan C. Evans, Nicola J. Mulder
, Jason Karamchandani
:
Consent Codes: Maintaining Consent in an Ever-expanding Open Science Ecosystem. 89-100

Shailesh Appukuttan
, Luca Leonardo Bologna
, Felix Schürmann, Michele Migliore, Andrew P. Davison
:
EBRAINS Live Papers - Interactive Resource Sheets for Computational Studies in Neuroscience. 101-113

Irina Belyaeva
, Ben Gabrielson, Yu-Ping Wang, Tony W. Wilson
, Vince D. Calhoun
, Julia M. Stephen, Tülay Adali:
Multi-Subject Analysis for Brain Developmental Patterns Discovery via Tensor Decomposition of MEG Data. 115-141

Irina Belyaeva, Ben Gabrielson, Yu-Ping Wang, Tony W. Wilson
, Vince D. Calhoun
, Julia M. Stephen, Tülay Adali:
Correction to: Multi-Subject Analysis for Brain Developmental Patterns Discovery via Tensor Decomposition of MEG Data. 143

Alberto Fernández-Pena
, Daniel Martín de Blas
, Francisco J. Navas-Sanchez, Luis Marcos-Vidal, Pedro M. Gordaliza, Javier Santonja
, Joost Janssen, Susanna Carmona, Manuel Desco
, Yasser Alemán-Gómez
:
ABLE: Automated Brain Lines Extraction Based on Laplacian Surface Collapse. 145-162

Ashlee S. Liao
, Wenxin Cui
, Yongjie Jessica Zhang
, Victoria A. Webster-Wood
:
Semi-Automated Quantitative Evaluation of Neuron Developmental Morphology In Vitro Using the Change-Point Test. 163-176

Kiri Choi
, Won Kyu Kim, Changbong Hyeon:
Polymer Physics-Based Classification of Neurons. 177-193

Rong Chen:
Bayesian Coherence Analysis for Microcircuit Structure Learning. 195-204

Rong Chen:
Correction to: Bayesian Coherence Analysis for Microcircuit Structure Learning. 205

Claire Guerrier
, Tristan Dellazizzo Toth
, Nicolas Galtier, Kurt Haas:
An Algorithm Based on a Cable-Nernst Planck Model Predicting Synaptic Activity throughout the Dendritic Arbor with Micron Specificity. 207-220

Freya Acar, Camille Maumet, Talia Heuten, Maya Vervoort, Han Bossier, Ruth Seurinck
, Beatrijs Moerkerke:
Review Paper: Reporting Practices for Task fMRI Studies. 221-242
Volume 21, Number 2, April 2023

Cyril R. Pernet
, Claus Svarer
, Ross Blair, John D. Van Horn
, Russell A. Poldrack
:
On the Long-term Archiving of Research Data. 243-246

Aybüke Erol, Chagajeg Soloukey, Bastian Generowicz, Nikki van Dorp
, Sebastiaan K. E. Koekkoek, Pieter Kruizinga, Borbála Hunyadi
:
Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition. 247-265

Aybüke Erol, Chagajeg Soloukey, Bastian Generowicz, Nikki van Dorp, Sebastiaan K. E. Koekkoek, Pieter Kruizinga, Borbála Hunyadi
:
Correction to: Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition. 267

Johanna Perens
, Casper Gravesen Salinas, Urmas Roostalu, Jacob Lercke Skytte
, Carsten Gundlach
, Jacob Hecksher-Sørensen
, Anders Bjorholm Dahl
, Tim B. Dyrby
:
Multimodal 3D Mouse Brain Atlas Framework with the Skull-Derived Coordinate System. 269-286

Harshvardhan Gazula
, Kelly Rootes-Murdy, Bharath Holla
, Sunitha Basodi, Zuo Zhang
, Eric Verner, Ross Kelly, Pratima Murthy, Amit Chakrabarti, Debasish Basu, Subodh Bhagyalakshmi Nanjayya, Rajkumar Lenin Singh, Roshan Lourembam Singh, Kartik Kalyanram, Kamakshi Kartik, Kalyanaraman Kumaran, Krishnaveni Ghattu, Rebecca Kuriyan
, Sunita Simon Kurpad, Gareth J. Barker
, Rose Dawn Bharath, Sylvane Desrivières
, Meera Purushottam, Dimitri Papadopoulos-Orfanos, Eesha Sharma, Matthew Hickman
, Mireille Toledano, Nilakshi Vaidya
, Tobias Banaschewski, Arun L. W. Bokde, Herta Flor, Antoine Grigis, Hugh Garavan, Penny A. Gowland
, Andreas Heinz
, Rüdiger Brühl, Jean-Luc Martinot, Marie-Laure Paillère-Martinot, Eric Artiges
, Frauke Nees
, Tomás Paus, Luise Poustka, Juliane H. Fröhner
, Lauren Robinson, Michael N. Smolka
, Henrik Walter
, Jeanne Winterer, Robert Whelan, Jessica A. Turner, Anand D. Sarwate
, Sergey M. Plis, Vivek Benegal, Gunter Schumann, Vince D. Calhoun
:
Federated Analysis in COINSTAC Reveals Functional Network Connectivity and Spectral Links to Smoking and Alcohol Consumption in Nearly 2,000 Adolescent Brains. 287-301

Yuhui Du, Yanshu Kong, Xingyu He:
IABC: A Toolbox for Intelligent Analysis of Brain Connectivity. 303-321

Jonathan Dudley, Thomas C. Maloney
, John O. Simon, Gowtham Atluri, Sarah L. Karalunas, Mekibib Altaye
, Jeffery N. Epstein, Leanne Tamm:
ABCD_Harmonizer: An Open-source Tool for Mapping and Controlling for Scanner Induced Variance in the Adolescent Brain Cognitive Development Study. 323-337

T. Illakiya
, R. Karthik
:
Automatic Detection of Alzheimer's Disease using Deep Learning Models and Neuro-Imaging: Current Trends and Future Perspectives. 339-364

Tommaso Costa, Donato Liloia
, Franco Cauda, Peter T. Fox, Francesca Dalla Mutta, Sergio Duca, Jordi Manuello:
A Minimum Bayes Factor Based Threshold for Activation Likelihood Estimation. 365-374

Tiina Manninen
, Jugoslava Acimovic
, Marja-Leena Linne
:
Analysis of Network Models with Neuron-Astrocyte Interactions. 375-406

Gaston E. Zanitti
, Yamil Soto, Valentin Iovene, Maria Vanina Martinez, Ricardo Oscar Rodríguez, Gerardo I. Simari, Demian Wassermann:
Scalable Query Answering Under Uncertainty to Neuroscientific Ontological Knowledge: The NeuroLang Approach. 407-425

Nicholas John Simos
, Katina Manolitsi, Andrea I. Luppi, Antonios Kagialis, Marios Antonakakis, Michalis E. Zervakis, Despina Antypa
, Eleftherios Kavroulakis, Thomas G. Maris
, Antonios Vakis, Emmanuel A. Stamatakis, Efrosini Papadaki:
Chronic Mild Traumatic Brain Injury: Aberrant Static and Dynamic Connectomic Features Identified Through Machine Learning Model Fusion. 427-442

Jodie P. Gray, Jordi Manuello, Aaron Alexander-Bloch
, Cassandra Leonardo, Crystal Franklin, Ki Sueng Choi, Franco Cauda, Tommaso Costa, John Blangero, David C. Glahn, Helen S. Mayberg, Peter T. Fox:
Co-alteration Network Architecture of Major Depressive Disorder: A Multi-modal Neuroimaging Assessment of Large-scale Disease Effects. 443-455

Jieqing Jiao, Fiona Heeman, Rachael Dixon, Catriona Wimberley, Isadora Lopes Alves, Juan Domingo Gispert
, Adriaan A. Lammertsma, Bart N. M. van Berckel, Casper O. da Costa-Luis, Pawel Markiewicz, David M. Cash
, M. Jorge Cardoso, Sébastien Ourselin, Maqsood Yaqub, Frederik Barkhof
:
NiftyPAD - Novel Python Package for Quantitative Analysis of Dynamic PET Data. 457-468
Volume 21, Number 3, July 2023

Hila Gast, Assaf Horowitz, Ronnie Krupnik
, Daniel Barazany, Shlomi Lifshits, Shani Ben-Amitay, Yaniv Assaf
:
A Method for In-Vivo Mapping of Axonal Diameter Distributions in the Human Brain Using Diffusion-Based Axonal Spectrum Imaging (AxSI). 469-482

Laura Keto
, Tiina Manninen
:
CellRemorph: A Toolkit for Transforming, Selecting, and Slicing 3D Cell Structures on the Road to Morphologically Detailed Astrocyte Simulations. 483-500

Daniel P. Chapman
, Stefano Vicini, Mark P. Burns
, Rebekah C. Evans:
Single Neuron Modeling Identifies Potassium Channel Modulation as Potential Target for Repetitive Head Impacts. 501-516

Nayereh Ghazi, Mohammad Hadi Aarabi
, Hamid Soltanian-Zadeh
:
Deep Learning Methods for Identification of White Matter Fiber Tracts: Review of State-of-the-Art and Future Prospective. 517-548

Tommaso Ciceri
, Letizia Squarcina, Alessandro Pigoni, Adele Ferro, Florian Montano
, Alessandra Bertoldo, Nicola Persico, Simona Boito, Fabio Maria Triulzi, Giorgio Conte, Paolo Brambilla, Denis Peruzzo:
Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester. 549-563

Emily S. Nichols
, Susana Correa, Peter Van Dyken
, Jason Kai, Tristan Kuehn
, Sandrine de Ribaupierre, Emma G. Duerden
, Ali R. Khan:
Funcmasker-flex: An Automated BIDS-App for Brain Segmentation of Human Fetal Functional MRI data. 565-573

Tatsuya Uchida
, Taichi Kin, Toki Saito, Naoyuki Shono, Satoshi Kiyofuji, Tsukasa Koike, Katsuya Sato, Ryoko Niwa, Ikumi Takashima, Hiroshi Oyama, Nobuhito Saito
:
De-Identification Technique with Facial Deformation in Head CT Images. 575-587

Nurfaten Hamzah
, Nurul Hashimah Ahamed Hassain Malim
, Jafri Malin Abdullah
, Putra Sumari
, Ariffin Marzuki Mokhtar
, Siti Nur Syamila Rosli, Sharifah Aida Shekh Ibrahim, Zamzuri Idris
:
Big Brain Data Initiatives in Universiti Sains Malaysia: Data Stewardship to Data Repository and Data Sharing. 589-600

Rosemary He
, Daniel Tward
:
Applying Joint Graph Embedding to Study Alzheimer's Neurodegeneration Patterns in Volumetric Data. 601-614

Maryam Sadeghi, Arnau Ramos-Prats
, Pedro Neto, Federico Castaldi, Devin Crowley, Pawel Matulewicz
, Enrica Paradiso
, Wolfgang Freysinger, Francesco Ferraguti, Georg Göbel:
Localization and Registration of 2D Histological Mouse Brain Images in 3D Atlas Space. 615-630

Kay Robbins
, Dung Truong, Alexander Jones, Ian Callanan, Scott Makeig:
Correction to: Building FAIR Functionality: Annotating Events in Time Series Data Using Hierarchical Event Descriptors (HED). 631
Volume 21, Number 4, October 2023

John Darrell Van Horn
, Zachary J. Jacokes
, Benjamin Newman
, Teague Henry
:
Editorial: Is Now the Time for Foundational Theory of Brain Connectivity? 633-635

Thomas L. Athey, Matthew A. Wright, Marija Pavlovic, Vikram Chandrashekhar, Karl Deisseroth, Michael I. Miller, Joshua T. Vogelstein:
BrainLine: An Open Pipeline for Connectivity Analysis of Heterogeneous Whole-Brain Fluorescence Volumes. 637-639

Zahra Papi, Sina Fathi
, Fatemeh Dalvand
, Mahsa Vali, Ali Yousefi
, Mohammad Hemmatyar Tabatabaei, Alireza Amouheidari
, Iraj Abedi:
Auto-Segmentation and Classification of Glioma Tumors with the Goals of Treatment Response Assessment Using Deep Learning Based on Magnetic Resonance Imaging. 641-650

Oswaldo Artiles, Zeina Al Masry
, Fahad Saeed
:
Confounding Effects on the Performance of Machine Learning Analysis of Static Functional Connectivity Computed from rs-fMRI Multi-site Data. 651-668

Tommaso Ciceri
, Letizia Squarcina, Alessandro Pigoni, Adele Ferro, Florian Montano
, Alessandra Bertoldo, Nicola Persico, Simona Boito, Fabio Maria Triulzi, Giorgio Conte, Paolo Brambilla, Denis Peruzzo:
Correction to: Geometric Reliability of Super-Resolution Reconstructed Images from Clinical Fetal MRI in the Second Trimester. 669

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