Customization of a SageMaker notebook instance using an LCC script (original) (raw)

Important

Custom IAM policies that allow Amazon SageMaker Studio or Amazon SageMaker Studio Classic to create Amazon SageMaker resources must also grant permissions to add tags to those resources. The permission to add tags to resources is required because Studio and Studio Classic automatically tag any resources they create. If an IAM policy allows Studio and Studio Classic to create resources but does not allow tagging, "AccessDenied" errors can occur when trying to create resources. For more information, see Provide permissions for tagging SageMaker AI resources.

AWS managed policies for Amazon SageMaker AI that give permissions to create SageMaker resources already include permissions to add tags while creating those resources.

A lifecycle configuration (LCC) provides shell scripts that run only when you create the notebook instance or whenever you start one. When you create a notebook instance, you can create a new LCC or attach an LCC that you already have. Lifecycle configuration scripts are useful for the following use cases:

Installing packages or sample notebooks on a notebook instance
Configuring networking and security for a notebook instance
Using a shell script to customize a notebook instance

You can also use a lifecycle configuration script to access AWS services from your notebook. For example, you can create a script that lets you use your notebook to control other AWS resources, such as an Amazon EMR instance.

We maintain a public repository of notebook lifecycle configuration scripts that address common use cases for customizing notebook instances at https://github.com/aws-samples/amazon-sagemaker-notebook-instance-lifecycle-config-samples.

Note

Each script has a limit of 16384 characters.

The value of the $PATH environment variable that is available to both scripts is/usr/local/sbin:/usr/local/bin:/usr/bin:/usr/sbin:/sbin:/bin. The working directory, which is the value of the $PWD environment variable, is /.

View CloudWatch Logs for notebook instance lifecycle configurations in log group/aws/sagemaker/NotebookInstances in log stream[notebook-instance-name]/[LifecycleConfigHook].

Scripts cannot run for longer than 5 minutes. If a script runs for longer than 5 minutes, it fails and the notebook instance is not created or started. To help decrease the run time of scripts, try the following:

Cut down on necessary steps. For example, limit which conda environments in which to install large packages.
Run tasks in parallel processes.
Use the nohup command in your script.

You can see a list of notebook instance lifecycle configurations you previously created by choosing Lifecycle configuration in the SageMaker AI console. You can attach a notebook instance LCC when you create a new notebook instance. For more information about creating a notebook instance, see Create an Amazon SageMaker notebook instance.

Lifecycle Configuration Best Practices

The following are best practices for using lifecycle configurations:

Important

We do not recommend storing sensitive information in your lifecycle configuration script.

Lifecycle configurations run as the root user. If your script makes any changes within the /home/ec2-user/SageMaker directory, (for example, installing a package with pip), use the command sudo -u ec2-user to run as theec2-user user. This is the same user that Amazon SageMaker AI runs as.
SageMaker AI notebook instances use conda environments to implement different kernels for Jupyter notebooks. If you want to install packages that are available to one or more notebook kernels, enclose the commands to install the packages with conda environment commands that activate the conda environment that contains the kernel where you want to install the packages.
For example, if you want to install a package only for thepython3 environment, use the following code:

#!/bin/bash  
sudo -u ec2-user -i <<EOF  
# This will affect only the Jupyter kernel called "conda_python3".  
source activate python3  
# Replace myPackage with the name of the package you want to install.  
pip install myPackage  
# You can also perform "conda install" here as well.  
source deactivate  
EOF

If you want to install a package in all conda environments in the notebook instance, use the following code:

#!/bin/bash  
sudo -u ec2-user -i <<EOF  
# Note that "base" is special environment name, include it there as well.  
for env in base /home/ec2-user/anaconda3/envs/*; do  
    source /home/ec2-user/anaconda3/bin/activate <span class="katex"><span class="katex-mathml"><math xmlns="http://www.w3.org/1998/Math/MathML"><semantics><mrow><mo stretchy="false">(</mo><mi>b</mi><mi>a</mi><mi>s</mi><mi>e</mi><mi>n</mi><mi>a</mi><mi>m</mi><mi>e</mi><mi mathvariant="normal">&quot;</mi></mrow><annotation encoding="application/x-tex">(basename &quot;</annotation></semantics></math></span><span class="katex-html" aria-hidden="true"><span class="base"><span class="strut" style="height:1em;vertical-align:-0.25em;"></span><span class="mopen">(</span><span class="mord mathnormal">ba</span><span class="mord mathnormal">se</span><span class="mord mathnormal">nam</span><span class="mord mathnormal">e</span><span class="mord">&quot;</span></span></span></span>env")  
    # Installing packages in the Jupyter system environment can affect stability of your SageMaker  
    # Notebook Instance.  You can remove this check if you'd like to install Jupyter extensions, etc.  
    if [ $env = 'JupyterSystemEnv' ]; then  
      continue  
    fi  
    # Replace myPackage with the name of the package you want to install.  
    pip install --upgrade --quiet myPackage  
    # You can also perform "conda install" here as well.  
    source /home/ec2-user/anaconda3/bin/deactivate  
done  
EOF

You must store all conda environments in the default environments folder (/home/user/anaconda3/envs).

Important

When you create or change a script, we recommend that you use a text editor that provides Unix-style line breaks, such as the text editor available in the console when you create a notebook. Copying text from a non-Linux operating system might introduce incompatible line breaks and result in an unexpected error.