Phylogeny and classification of Rosaceae (original) (raw)
(2003). An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG II. Bot. J. Linn. Soc. 141: 399–436 Article Google Scholar
Baillon H. (1869). Histoire des plantes, vol. 1. Librairie de L. Hachette, Paris Google Scholar
Benson D. R. and Silvester W. B. (1993). Biology of Frankia strains, actinomycete symbionts of actinorhizal plants. Microbiol. Rev. 57: 293–319 PubMedCAS Google Scholar
Bortiri E., Oh S., Gao F. and Potter D. (2002). The phylogenetic utility of nucleotide sequences of sorbitol 6-phosphate dehydrogenase in Prunus (Rosaceae). Amer. J. Bot. 89: 1697–1708 CAS Google Scholar
Bortiri E., Oh S., Jiang J., Baggett S., Granger A., Weeks C., Buckingham M., Potter D. and Parfitt D. (2001). Phylogeny and systematics of Prunus (Rosaceae) as determined by sequence analysis of ITS and the chloroplast _trn_L-_trn_F spacer DNA. Syst. Bot. 26: 797–807 Google Scholar
Boss P. K., Gardner R. C., Janssen B. J. and Ross S. P. (1995). An apple polyphenol oxidase cDNA is up-regulated in wounded tissues. Pl. Molec. Biol. 27: 429–433 ArticleCAS Google Scholar
Campbell C. S., Donoghue M. J., Baldwin B. G. and Wojciechowski M. F. (1995). Phylogenetic relationships in Maloideae (Rosaceae): evidence from sequences of the internal transcribed spacers of nuclear ribosomal DNA and its congruence with morphology. Amer. J. Bot. 27: 903–918 Article Google Scholar
Campbell C. S., Evans R. C., Morgan D. R., Dickinson T. A. and Arsenault M. P. (2007). Phylogeny of subtribe Pyrinae (formerly the Maloideae, Rosaceae): limited resolution of a complex evolutionary history. Pl. Syst. Evol. 266: 119–145 ArticleCAS Google Scholar
Chevalier T., de Rigal D., Mbeguie-AMbeguie D., Gauillard F., Richard-Forget F., and Fils-Lycaon B. R. (1999). Molecular cloning and characterization of apricot fruit polyphenol oxidase. Pl. Physiol. (Lancaster) 119: 1261–1270 ArticleCAS Google Scholar
Chevreau E. and Laurens F. (1987). The pattern of inheritance in apple (Malus × domestica Borkh.): further results from leaf isozyme analysis. Theor. Appl. Genet. 75: 90–95 Article Google Scholar
Chevreau E., Lespinasse Y. and Gallet M. (1985). Inheritance of pollen enzymes and polyploid origin of apple (Malus × domestica Borkh.). Theor. Appl. Genet. 71: 268–277 CAS Google Scholar
Cronquist A. (1981). An integrated system of classification of flowering plants. Columbia University Press, New York Google Scholar
Cuatrecasas J. (1970). Flora Neotropica Monograph No. 2, Brunelliaceae. Hafner, Darien, Connecticut Google Scholar
Du Mortier B.-C. (1827). Florula belgica: operis majoris prodromus. J. Casterman, Tournay Google Scholar
Eriksson T., Donoghue M. J. and Hibbs M. S. (1998). Phylogenetic analysis of Potentilla using DNA sequences of nuclear ribosomal internal transcribed spacers (ITS), and implications for the classification of Rosoideae (Rosaceae). Pl. Syst. Evol. 211: 155–179 ArticleCAS Google Scholar
Eriksson T., Hibbs M. S., Yoder A. D., Delwiche C. F. and Donoghue M. J. (2003). The phylogeny of Rosoideae (Rosaceae) based on sequences of the internal transcribed spacers (ITS) of nuclear ribosomal DNA and the _trn_L/F region of chloroplast DNA. Int. J. Pl. Sci. 164: 197–211 ArticleCAS Google Scholar
Evans R. C. (1999) Molecular, morphological, and ontogenetic evaluation of relationships and evolution in the Rosaceae. Ph.D. dissertation, University of Toronto, Toronto.
Evans R. C. and Campbell C. S. (2002). The origin of the apple subfamily (Maloideae; Rosaceae) is clarified by DNA sequence data from duplicated GBSSI genes. Amer. J. Bot. 89: 1478–1484 CAS Google Scholar
Evans R. C. and Dickinson T. A. (1999a). Floral ontogeny and morphology in subfamily Amygdaloideae T. and G. (Rosaceae). Int. J. Pl. Sci. 160: 955–979 Article Google Scholar
Evans R. C. and Dickinson T. A. (1999b). Floral ontogeny and morphology in subfamily Spiraeoideae Endl. (Rosaceae). Int. J. Pl. Sci. 160: 981–1012 Article Google Scholar
Evans R. C. and Dickinson T. A. (2005). Floral ontogeny and morphology in Gillenia (``Spiraeoideae'') and subfamily Maloideae C. Weber (Rosaceae). Int. J. Pl. Sci. 166: 427–447 Article Google Scholar
Evans R. C., Alice L. A., Campbell C. S., Kellogg E. A. and Dickinson T. A. (2000). The granule-bound starch synthase (GBSSI) gene in the Rosaceae: multiple loci and phylogenetic utility. Molec. Phylogenet. Evol. 17: 388–400 ArticlePubMedCAS Google Scholar
Farr D. F. (1989). Fungi on plants and plant products in the United States. APS Press, St. Paul, Minnesota Google Scholar
Farr D.F.,Rossman A.Y., Palm M. E.,McCray E. B. (2005) Fungal databases, systematic botany and mycology laboratory. Agricultural Research Service, United States Department of Agriculture, available at http://nt.ars-grin.gov/fungaldatabases/.
Gladkova V. N. (1972). On the origin of subfamily Maloideae. Bot. Zhurn. 57: 42–49 Google Scholar
Gray A. (1842). The botanical text-book. Putnam, New York Google Scholar
Greuter W., McNeil J., Barrie F. R., Burdet H. M., Demoulin V., Filgueiras T. S., Nicolson D. H., Silva P. C., Skog J. E., Trehane P., Turland N. J., Hawksworth D. L. (eds.) (2000) International code of botanical nomeclature. (Tokyo Code). Koeltz Scientific Books, Königstein.
Haruta M., Murata M., Hiraide A., Kadokura H., Yamasaki M., Sakuta M., Shimizu S. and Homma S. (1998). Cloning genomic DNA encoding apple polyphenol oxidase and comparison of the gene product in Escherichia coli and in apple. Biosci. Biotechnol. Biochem. 62: 358–362 ArticlePubMedCAS Google Scholar
Haruta M., Murata M., Kadokura H. and Homma S. (1999). Immunological and molecular comparison of polyphenol oxidase in Rosaceae fruit trees. Phytochemistry 50: 1021–1025 ArticlePubMedCAS Google Scholar
Helfgott D. M., Francisco-Ortega J, Santos-Guerra A., Jansen R. K. and Simpson B. B. (2000). Biogeography and breeding system evolution of the woody Bencomia alliance (Rosaceae) in Macaronesia based on ITS sequence data. Syst. Bot. 25: 82–97 Article Google Scholar
Henrickson J. (1986). Notes on Rosaceae. Phytologia 468: 60 Google Scholar
Huelsenbeck J. P. and Ronquist F. (2001). MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754–755 ArticlePubMedCAS Google Scholar
Hutchinson J. (1964). The genera of flowering plants, vol. 1, Dicotyledons. Clarendon Press, Oxford Google Scholar
Hutchinson J. (1969). Evolution and phylogeny of flowering plants. Academic Press, London Google Scholar
International Plant Names Index (2006) Published on the internet at http://www.ipni.org.
Judd W. S. and Olmstead R. G. (2004). A survey of tricolpate (eudicot) phylogenetic relationships. Amer. J. Bot. 91: 1627–1644 Google Scholar
Kalkman C. (1965). The Old World species of Prunus subgen. Laurocerasus including those formerly referred to Pygeum. Blumea 13: 1–115 Google Scholar
Kalkman C. (2004). Rosaceae. In: Kubitzki, K. (eds) The families and genera of vascular plants, vol. 6, Flowering plants - Dicotyledons: Celastrales, Oxalidales, Rosales, Cornales, Ericales, pp 343–386. Springer, Berlin Google Scholar
Kerr M. S. (2004) A phylogenetic and biogeographic analysis of Sanguisorbeae (Rosaceae), with emphasis on the Pleistocene radiation of the high Andean genus Polylepis. Ph.D. dissertation, University of Maryland, College Park.
Koehne E. (1890). Die Gattungen der Pomaceen. Gaertner, Berlin Google Scholar
Kubitzki K. (2004). The families and genera of vascular plants, vol. 6, Flowering plants – Dicotyledons: Celastrales, Oxalidales, Rosales, Cornales, Ericales. Springer, Berlin Google Scholar
Lawrence G. H. M. (1951). Taxonomy of vascular plants. Macmillan, New York Google Scholar
Lee S. and Wen J. (2001). A phylogenetic analysis of Prunus and the Amygdaloideae (Rosaceae) using ITS sequences of nuclear ribosomal DNA. Amer. J. Bot. 88: 150–160 ArticleCAS Google Scholar
Mabberley D. J. (2002). Potentilla and Fragaria (Rosaceae) reunited. Telopea 9: 793–801 Google Scholar
Maddison W. P. and Maddison D. R. (2003). MacClade, version 4.06. Analysis of phylogeny and character evolution. Sinauer Associates, Inc., Sunderland, Massachusetts Google Scholar
Morgan D. R., Soltis D. E. and Robertson K. R. (1994). Systematic and evolutionary implications of _rbc_L sequence variation in Rosaceae. Amer. J. Bot. 81: 890–903 ArticleCAS Google Scholar
Oh S. (2006). Neillia includes Stephanandra (Rosaceae). Novon 16: 91–95 Article Google Scholar
Oh S. and Potter D. (2005). Molecular phylogenetic systematics and biogeography of tribe Neillieae (Rosaceae) using DNA sequences of cpDNA, rDNA and LEAFY. Amer. J. Bot. 92: 179–192 CAS Google Scholar
Oh S. and Potter D. (2006). Description and phylogenetic position of a new angiosperm family, Guamatelaceae, inferred from chloroplast _rbc_L, _atp_B and _mat_K sequences. Syst. Bot. 31: 730–738 Article Google Scholar
Pankhurst R. (2005) Rosaceae database. On-line searchable version available through the International Organization for Plant Information’s Provisional Global Plant Checklist at: http://bgbm3.bgbm.fu-berlin.de/iopi/gpc/query.asp.
Potter D. (2003). Molecular phylogenetic studies in Rosaceae. In: Sharma, A. K. and Sharma, A. (eds) Plant genome: Biodiversity and evolution, vol. I, Pt. A: Phanerogams, pp 319–351. Science Publishers, Inc. Enfield, New Hampshire Google Scholar
Potter D., Gao F., Bortiri P. E., Oh S. and Baggett S. (2002). Phylogenetic relationships in Rosaceae inferred from chloroplast _mat_K and _trn_L-_trn_F nucleotide sequence data. Pl. Syst. Evol. 231: 77–89 ArticleCAS Google Scholar
Potter D., Still S. M., Ballian D. and Kraigher H. (2006). Phylogenetic relationships in tribe Spiraeeae (Rosaceae) inferred from nucleotide sequence data. Pl. Syst. Evol. 266: 105–118 ArticleCAS Google Scholar
Raspé O., Jacquemart A.-L. and De Sloover J. (1998). Isozymes in Sorbus aucuparia (Rosaceae: Maloideae): genetic analysis and evolutionary significance of zymograms. Int. J. Pl. Sci. 159: 627–636 Article Google Scholar
Reveal J. L. (2004) Index nominum supragenericorum plantarum vascularum.?http://www. life.umd.edu/emeritus/reveal/pbio/WWW/supra gen.html.
Robertson K. R., Phipps J. B. and Rohrer J. R. (1991). A synopsis of genera in Maloideae (Rosaceae). Syst. Bot. 16: 376–394 Article Google Scholar
Rohrer J. R., Robertson K. R. and Phipps J. B. (1994). Floral morphology of Maloideae (Rosaceae) and its systematic relevance. Amer. J. Bot. 81: 574–581 Article Google Scholar
Roitman A., Flaks B. R., Fradkina L. Z. and Federov A. A. (1974). Chromosome numbers of flowering plants. Ger. Otto Koeltz Science Publishers, Koenigstein Google Scholar
Savile D. B. O. (1979). Fungi as aids in higher plant classification. Bot. Rev. 45: 380–495 Article Google Scholar
Sax K. (1933). The origin of the Pomoideae. Proc. Amer. Soc. Hort. Sci. 30: 147–150 Google Scholar
Schulze-Menz G. K. (1964). Rosaceae. In: Melchior, H. (eds) Engler's Syllabus der Pflanzenfamilien II, pp 209–218. Gebrüder Borntraeger, Berlin Google Scholar
Shaw J. and Small R. L. (2004). Addressing the “hardest puzzle in American pomology:” phylogeny of Prunus sect. Prunocerasus (Rosaceae) based on seven noncoding chloroplast DNA regions. Amer. J. Bot. 91: 985–996 CAS Google Scholar
Simpson C .G., Macrae E. and Gardner R. C. (1995). Cloning of a polygalacturonase inhibiting protein from kiwifruit (GenBank Z49063). Pl. Physiol. 108: 1748 Google Scholar
Smedmark J. E. E. (2006). Recircumscription of Geum L. (Colurieae: Rosaceae). Bot. Jahrb. Syst. 126: 409–417 Article Google Scholar
Smedmark J. E. E. and Eriksson T. (2002). Phylogenetic relationships of Geum (Rosaceae) and relatives inferred from the nrITS and _trn_L-_trn_F regions. Syst. Bot. 27: 303–317 Google Scholar
Smedmark J. E. E., Eriksson T. and Bremer B. (2005). Allopolyploid evolution in Geinae (Colurieae: Rosaceae) – building reticulate species trees from bifurcating gene trees. Organisms Divers. Evolut. 5: 275–283 Article Google Scholar
Smedmark J. E. E., Eriksson T., Evans R. C. and Campbell C. S. (2003). Ancient allopolypoloid speciation in Geinae (Rosaceae): evidence from nuclear granule-bound starch synthase (GBSSI) gene sequences. Syst. Biol. 52: 374–385 PubMed Google Scholar
Soltis D. E., Soltis P. S., Chase M. W., Mort M. E., Albach D. C., Zanis M., Savolainen V., Hahn W. H., Hoot S. B., Fay M. F., Axtell M., Swensen S. M., Prince L. M., Kress W. J., Nixon K. C. and Farris J. S. (2000). Angiosperm phylogeny inferred from 18S rDNA, _rbc_L, and _atp_B sequences. Bot. J. Linn. Soc. 133: 381–461 Article Google Scholar
Spjut R. W. (1994). A systematic treatment of fruit types. Mem. New York Bot. Gard. 70: 1–182 Google Scholar
Staden R. (1996). The Staden sequence analysis package. Mol. Biotechnol. 5: 233–241 PubMedCAS Google Scholar
Sterling C. (1964). Comparative morphology of the carpel in the Rosaceae. III. Pomoideae: Crataegus, Hesperomeles, Mespilus, Osteomeles. Amer. J. Bot. 51: 705–712 Article Google Scholar
Sterling C. (1965a). Comparative morphology of the carpel in the Rosaceae. IV. Pomoideae: Chamaemeles, Cotoneaster, Dichotomanthes, Pyracantha. Amer. J. Bot. 52: 47–54 Article Google Scholar
Sterling C. (1965b). Comparative morphology of the carpel in the Rosaceae. V. Pomoideae: Amelanchier, Aronia, Malacomeles, Malus, Peraphyllum, Pyrus, Sorbus. Amer. J. Bot. 52: 418–426 Article Google Scholar
Sterling C. (1965c). Comparative morphology of the carpel in the Rosaceae. VI. Pomoideae: Eriobotrya, Heteromeles, Photinia, Pourthiaea, Raphiolepis, Stranvaesia. Amer. J. Bot. 52: 938–946 Article Google Scholar
Sterling C. (1966). Comparative morphology of the carpel in the Rosaceae. VII. Pomoideae: Chaenomeles, Cydonia, Docynia. Amer. J. Bot. 53: 225–231 Article Google Scholar
Stotz H. U., Powell A. L. T., Damon S. E., Greve L. C., Bennett A. B. and Labavitch J. M. (1993). Molecular characterization of a polygalacturonase inhibitor from Pyrus communis L. cv. Bartlett. Pl. Physiol. (Lancaster) 102: 133–138 CAS Google Scholar
Stotz H. U., Contos J. J., Powell A. L., Bennett A. B. and Labavitch J. M. (1994). Structure and expression of an inhibitor of fungal polygalacturonases from tomato. Pl. Molec. Biol. 25: 607–617 ArticleCAS Google Scholar
Swofford D. L. (2002). PAUP* Phylogenetic analysis using (* and other methods) parsimony Version 4. Sinauer Associates, Sunderland, Massachusetts Google Scholar
Taberlet P., Gielly L., Patou G. and Bouvet J. (1991). Universal primers for amplification of three non-coding regions of chloroplast DNA. Pl. Molec. Biol. 17: 1105–1109 ArticleCAS Google Scholar
Takhtajan A. (1997). Diversity and classification of flowering plants. Columbia University Press, New York Google Scholar
Thompson J. D., Gibson T. J., Plewniak F., Jeanmougin F. and Higgins D. G. (1997). The CLUSTALX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucl. Acids Res. 25: 4876–4882 ArticlePubMedCAS Google Scholar
Toubart P., Desiderio A., Salvi G., Cervone F., Daroda L. and De Lorenzo G. (1992). Cloning and characterization of the gene encoding the endopolygalacturonase-inhibiting protein (PGIP) of Phaseolus vulgaris L. Pl. J. 2: 367–373 CAS Google Scholar
Vanden Heuvel B. D., Benson D. R., Bortiri E. and Potter D. (2004). Low genetic diversity among Frankia spp. strains nodulating sympatric populations of actinorhizal species of Rosaceae, Ceanothus (Rhamnaceae) and Datisca glomerata (Datiscaceae) west of the Sierra Nevada (California). Canad. J. Microbiol. 50: 989–1000 ArticleCAS Google Scholar
Wallaart R. A. M. (1980). Distribution of sorbitol in Rosaceae. Phytochemistry 19: 2603–2610 ArticleCAS Google Scholar
Weeden N. and Lamb R. (1987). Genetics and linkage analysis of 19 isozyme loci in apple. J. Amer. Soc. Hort. Sci. 112: 865–872 CAS Google Scholar
Wiens J. J. (2003). Missing data, incomplete taxa and phylogenetic accuracy. Syst. Biol. 52: 528–538 ArticlePubMed Google Scholar
Xia X. and Xie Z. (2001). DAMBE: software package for data analysis in molecular biology and evolution. J. Heredity 92: 371–373 ArticleCAS Google Scholar
Yao C., Conway W. S. and Sams C. E. (1995). Purification and characterization of a polygalacturonase-inhibiting protein from apple fruit. Phytopathology 85: 1373–1377 ArticleCAS Google Scholar