Summary of phylogeny in subfamily Colobinae (Primate: Cercopithecidae) (original) (raw)
References
Groves C P. Primate Taxonomy. Washington: Smithsonian Institution Press, 2001 Google Scholar
Fleagle J G. Old World Monkeys. In: Fleagle J G, ed. Primate Adaptation and Evolution. New York: Academic Press, 1998. 185–218 Google Scholar
Oates J F, Davies A G, Delson E. What are the colobines? In: Davies A G, Oates J F, eds. Colobine Monkeys—Their Ecology, Behavior, and Evolution. Cambridge: Cambridge University Press, 1994. 1–10 Google Scholar
Chivers D J, Hladik C M. Morphology of the gastrointestinal tract in primates: Comparisons with other mammals in relation to diet. J Morphol, 1980, 166: 337–386 Article Google Scholar
Zhang J, Zhang Y P, Rosenberg H F. Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey. Nat Genet, 2002, 30: 411–415 Article Google Scholar
Zhang J. Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys. Nat Genet, 2006, 38: 819–823 Article Google Scholar
Yu L, Wang X Y, Jin W, et al. Adaptive evolution of digestive RNASE1 genes in leaf-eating monkeys revisited: New insights from ten additional colobines. Mol Biol Evol, 2010, 27: 121–131 Article Google Scholar
Wang X Y, Li N Z, Yu L, et al. Duplication and functional diversification of pancreatic ribonuclease (RNASE1) gene. Chin Sci Bull, 2010, 55: 2–6 Article Google Scholar
Wang X P, Jin W, Yu L, et al. Molecular evolution of stress-response gene Leptin in high-altitude Chinese snub-nosed monkeys (Rhiopithecus genus). Chin Sci Bull, 2010, 55: 4132–4135 Article Google Scholar
Yu L, Wang X P, Ting N, et al. Mitogenomic analysis of Chinese snub-nosed monkeys: Evidence of positive selection in NADH dehydrogenase genes in high-altitude adaptation. Mitochondrion, 2011, 11: 497–503 Article Google Scholar
Groves C P. A Theory of Human and Primate Evolution. Oxford: Oxford University Press, 1989 Google Scholar
Davies A G, Oates J F. Colobine Monkeys: Their Ecology, Behavior, and Evolution. Cambridge: Cambridge University Press, 1994 Google Scholar
Disotell T R. Primates: Phylogenetics. Encyclopedia of the Human Genome. London: Nature Publishing Group, 2003 Google Scholar
Brandon-Jones D, Eudey A A, Geissmann T, et al. Asian Primate Classification. Int J Primatol, 2004, 25: 97–164 Article Google Scholar
Stewart C B, Disotell T R. Primate evolution—in and out of Africa. Curr Biol, 1998, 8: R582–588 Article Google Scholar
Delson E. Evolutionary history of the colobine monkeys in paleoenvironmental perspective. In: Davies A G, Oates J F, eds. Colobine Monkeys: Their Ecology, Behavior, and Evolution. Cambridge: Cambridge University Press, 1994. 11–44 Google Scholar
Sterner K N, Raaum R L, Zhang Y P, et al. Mitochondrial data support an odd-nosed colobine clade. Mol Phylogenet Evol, 2006, 40: 1–7 Article Google Scholar
Perelman P, Johnson W E, Roos C, et al. A molecular phylogeny of living primates. PLoS Genet, 2011, 7: e1001342 Article Google Scholar
Roos C, Zinner D, Kubatko L S, et al. Nuclear versus mitochondrial DNA: Evidence for hybridization in colobine monkeys. BMC Evol Biol, 2011, 11: 77 Article Google Scholar
Groves C P. The taxonomic diversity of the Colobinae of Africa. J Anthropol Sci, 2007, 85: 7–34 Google Scholar
Grubb P, Butynski T M, Oates J F, et al. Assessment of the diversity of African primates. Int J Primatol, 2003, 24: 1301–1357 Article Google Scholar
Kingston J D, Fine Jacobs B, Hill A, et al. Stratigraphy, age and environments of the late Miocene Mpesida Beds, Tugen Hills, Kenya. J Hum Evol, 2002, 42: 95–116 Article Google Scholar
Groves C P. SUBFAMILY Colobinae. In: Wilson D E, Reeder D M, eds. Mammal Species of the World. 3rd ed. Baltimore: Johns Hopkins University Press, 2005. 167–178 Google Scholar
Ting N. Mitochondrial relationships and divergence dates of the African colobines: Evidence of Miocene origins for the living colobus monkeys. J Hum Evol, 2008, 55: 312–325 Article Google Scholar
Fabre P H, Rodrigues A, Douzery E J. Patterns of macroevolution among primates inferred from a supermatrix of mitochondrial and nuclear DNA. Mol Phylogenet Evol, 2009, 53: 808–825 Article Google Scholar
Ting N, Tosi A J, Li Y, et al. Phylogenetic incongruence between nuclear and mitochondrial markers in the Asian colobines and the evolution of the langurs and leaf monkeys. Mol Phylogenet Evol, 2008, 46: 466–474 Article Google Scholar
Strasser E, Delson E. Cladistic analysis of cercopithecid relationships. J Hum Evol, 1987, 16: 81–99 Article Google Scholar
Grubb P, Butynski T M, Oates J F, et al. Assessment of the diversity of african primates. Int J Primatol, 2003, 24: 1301–1357 Article Google Scholar
Chatterjee H J, Ho S Y, Barnes I, et al. Estimating the phylogeny and divergence times of primates using a supermatrix approach. BMC Evol Biol, 2009, 9: 259 Article Google Scholar
Meyer D, Rinaldi I D, Ramlee H, et al. Mitochondrial phylogeny of leaf monkeys (genus Presbytis, Eschscholtz, 1821) with implications for taxonomy and conservation. Mol Phylogenet Evol, 2011, 59: 311–319 Article Google Scholar
Wang X P, Yu L, Roos C, et al. Phylogenetic relationships among the Colobine monkeys revisited: New insight from analyses of complete mt genomes and 44 nuclear non-coding markers. PLoS One, 2012, 7: e36274 Article Google Scholar
Groves C P. The forgotten leaf-eaters and the phylogeny of Colobinae. In: Napier J R, Napier P H, eds. Old World Monkeys. New York: Academic Press, 1970. 629–647 Google Scholar
Grzimek B. Grzimek’s Encyclopedia of Mammals. New York: McGraw-Hill, 1990 Google Scholar
Elliot D G. A Review of the Primates. New York: American Museum of Natural History, 1913 Google Scholar
Macdonald D. The Encyclopedia of Mammals. New York: Facts on File Publication, 1984. 398–411 Google Scholar
Napier J R, Napier P H. A Handbook of Living Primates. London: Academic Press, 1967 Google Scholar
Simpson G G. The principles of classification and a classification of mammals. Bull Amer Mus Nat Hist, 1945, 85: 1–350 Google Scholar
Ellerman J R, Morrison-Scott T C S. Checklist of Palaearctic and Indian mammals. London: British Musseum (Natural History), 1951. 1758–1946 Google Scholar
Hershkovitz P. Living New World Primates (Platyrrhini), with an Introduction to Primates. Chicago: University of Chicago Press, 1977 Google Scholar
Nowak R M, Walker S. Mammals of the World. Baltimore & London: The Johns Hopkins University Press, 1991 Google Scholar
Hill W C O. Primates: Comparative Anatomy and Taxonomy. Edinburgh: Edinburgh University Press, 1970 Google Scholar
Hill W C O. Evolutionary Biology of the Primates. London: Academic Press, 1972 Google Scholar
Hill W C O. A monograph on the purpled-faced leaf-monkeys (Pithecus vetulus). Ceylon J Sci, 1934, 9: 23–88 Google Scholar
Groves C P. Cercopithecus and company: A primate radiation. Science, 1989, 244: 860–861 Article Google Scholar
Eudey A A. Asian primate conservation—The species and the IUCN/SSC primate specialist network. Primate Conservation, 1997, 17: 101–110 Google Scholar
Groves C P. The forgotten leaf-eaters and the phylogeny of Colobinae. In: Napier J R, Napier P H, eds. Old World Monkeys. New York: Academic Press, 1970. 555–586 Google Scholar
Jablonski N G. The evolution of the doucs and snub-nosed monkeys and the question of the phyletic unity of the odd-nosed colobines. In: Jablonski N G, ed. The Natural History of the Doucs and Snub-Nosed Monkeys. Singapore: World Scientific Press, 1998. 13–52 Chapter Google Scholar
Jablonski N G, Peng Y Z. The phylogenetic relationships and classification of the doucs and snub-nosed langurs of China and Vietnam. Folia Primatol, 1993, 60: 36–55 Article Google Scholar
Wang W, Forstner M R J, Zhang Y P, et al. A phylogeny of Chinese leaf monkeys using mitochondrial ND3-ND4 gene sequences. Int J Primatol, 1997, 18: 305–320 Article Google Scholar
Zhang Y P, Ryder O A. Mitochondrial cytochrome b gene sequences of Old World monkeys: With special reference on evolution of Asian colobines. Primates, 1998, 39: 39–49 Article Google Scholar
Li M, Wei F, Huang C, et al. Phylogeny of snub-nosed monkeys inferred from Mitochondrial DNA, Cytochrome B, and 12S rRNA sequences. Int J Primatol, 2004, 25: 861–873 Article Google Scholar
Osterholz M, Walter L, Roos C. Phylogenetic position of the langur genera Semnopithecus and Trachypithecus among Asian colobines, and genus affiliations of their species groups. BMC Evol Biol, 2008, 8: 58 Article Google Scholar
Bigoni F, Houck M, Ryder O, et al. Chromosome painting shows that Pygathrix nemaeus has the most basal karyotype among Asian colobinae. Int J Primatol, 2004, 25: 679–688 Article Google Scholar
Bigoni F, Stanyon R, Wimmer R, et al. Chromosome painting shows that the proboscis monkey (Nasalis larvatus) has a derived karyotype and is phylogenetically nested within Asian colobines. Am J Primatol, 2003, 60: 85–93 Article Google Scholar
Jablonski N G. Quaternary environments and the evolution of primates in East Asia, with notes on two new specimens of fossil Cercopithecidae from China. Folia Primatol, 1993, 60: 118–132 Article Google Scholar
Napier J R, Napier P H. Old World Monkeys. New York: Academic Press, 1970 Google Scholar
Pan R. Dental variation among Asian colobines, with specific reference to the macaques on the same continent. Zool Res, 2007, 28: 569–579 Google Scholar
Peng Y, Pan R, Ye Z, et al. Comparative study on cranioface and brain case in Asian colobines (in Chinese). Acta Anthropol Sin, 1991, 10: 346–356 Google Scholar
Szalay F S, Delson E. Evolutionary History of the Primates. New York: Academic Press, 1979 Google Scholar
Weitzel V, Yang C M, Groves C P. A catalogue of primate in the Singapore Zoological Reference Collection. Raffles Bull of Zool, 1988, 36: 1–166 Google Scholar
Delson E. Evolutionary history of the Cercopithecidae. Contrib Primatol, 1975, 5: 167–217 Google Scholar
Whittaker D J, Ting N, Melnick D J. Molecular phylogenetic affinities of the simakobu monkey (Simias concolor). Mol Phylogenet Evol, 2006, 39: 887–892 Article Google Scholar
Li Z Y. Preliminary investigation of the habitats of Presbytis francoisi and Presbytis leucocephalus, with notes on the activity pattern of Presbytis leucocephalus. Folia Primatol (Basel), 1993, 60: 83–93 Article Google Scholar
Peng Y Z, Ye Z Z, Pan R L. The classification and phylogeny of snub-nosed monkeys based on gross morphological characters. Zool Res, 1988, 9: 239–247 Google Scholar
Pocock R I. The langurs, or leaf monkeys, of British India. Part II. J Bombay Nat Hist Soc 1928, 32: 660–677 Google Scholar
Wolfheim J H. Primates of the World. Seattle: University of Washington Press, 1983 Google Scholar
Oates J F, Davies A G, Delson E. The diversity of living colobines. In: Davies A G, Oates J F, eds. Colobine Monkeys: Their Ecology, Behavior, and Evolution. Cambridge: Cambridge University Press, 1994. 45–74 Google Scholar
Md-Zain B M, Morales J C, Hasan M N, et al. Is Presbytis a distinct monophyletic genus: Inferences from mitochondrial DNA sequences. Asian Primates J, 2008, 1: 26–36 Google Scholar
Md-Zain B M, Mohamad M, Ernie-Muneerah M A, et al. Phylogenetic relationships of Malaysian monkeys, Cercopithecidae, based on mitochondrial cytochrome c sequences. Genet Mol Res, 2010, 9: 1987–1996 Article Google Scholar
Hooijer D A. Quaternary Langurs and Macaques from the Malay archipelago. Zool Verhandelingen, 1962, 55: 1–64 Google Scholar
Brandon-Jones D. Colobus and leaf monkeys. In: Macdonald D, ed. The Encyclopaedia of Mammals. London: Allen and Unwin, 1984. 398–410 Google Scholar
Brandon-Jones D. The Asian Colobinae (Mammalia: Cercopithecidae) as indicators of Quaternary climatic change. Biol J Linn Soc, 1996, 59: 327–350 Google Scholar
Karanth K P. Molecular systematics and conservation of the langurs and leaf monkeys of South Asia. J Genet, 2010, 89: 393–399 Article Google Scholar
Jablonski N G, Peng Y Z. The phylogenetic relationships and classification of the doucs and snub-nosed langurs of China and Vietnam. Folia Primatol (Basel), 1993, 60: 36–55 Article Google Scholar
Boonratana R, Le X C. Preliminary Observations of the Ecology and Behavior of the Tonkin Snub-nosed Monkey (Rhinopithecus [_Presbytiscus_] avunculus) in Northern Vietnam. In: Jablonski N G, ed. The Natural History of the Doucs and Snub-nosed Monkeys. Singapore: World Scientific Publishing, 1998 Google Scholar
Kirkpatrick R C. Ecology and behavior in snub-nosed and douc langurs. In: Jablonski N G, ed. The Natural History of the Doucs and Snub-nosed Monkeys. Singapore: World Scientific Press, 1998. 155–190 Chapter Google Scholar
Zhang Y, Ryder O A. Mitochondrial DNA sequence evolution and conservation relevance of snub-nosed langurs. Acta Genet Sin, 1997, 24: 116–121 Google Scholar
Geissmann T, Groves C P, Roos C. The Tenasserim Lutung, Trachypithecus barbei (Blyth, 1847) (Primates: Cercopithecidae): Description, of a live specimen, and a reassessment of phylogenetic affinities, taxonomic history, and distribution. Contrib Zool, 2004, 73: 271–282 Google Scholar
Karanth K P, Singh L, Collura R V, et al. Molecular phylogeny and biogeography of langurs and leaf monkeys of South Asia (Primates: Colobinae). Mol Phylogenet Evol, 2008, 46: 683–694 Article Google Scholar
Karanth K P. Primate numts and reticulate evolution of capped and golden leaf monkeys (Primates: Colobinae). J Biosci, 2008, 33: 761–770 Article Google Scholar
Rokas A, Carroll S B. Bushes in the tree of life. PLoS Biol, 2006, 4: 1899–1904 Article Google Scholar
Philippe H, Chenuil A, Adoutte A. Can the Cambrian explosion be inferred through molecular phylogeny? Development, 1994, 120: S15–S25 Google Scholar
Saitou N, Nei M. The number of nucleotides required to determine the branching order of three species, with special reference to the human-chimpanzee-gorilla divergence. J Mol Evol, 1986, 24: 189–204 Article Google Scholar
Yu L, Zhang Y P. Phylogenomics: An attractive avenue to reconstruct “tree of life” (in Chinese). Hereditas, 2006, 28: 1445–1450 Google Scholar
Meslin C, Brimau F, Nagnan-Le Meillour P, et al. The evolutionary history of the SAL1 gene family in eutherian mammals. BMC Evol Biol, 2011, 11: 148 Article Google Scholar
Wu Y C, Rasmussen M D, Kellis M. Evolution at the subgene level: Domain rearrangements in the Drosophila phylogeny. Mol Biol Evol, 2011, 29: 689–705 Article Google Scholar
Yu L, Luan P T, Jin W, et al. Phylogenetic utility of nuclear introns in interfamilial relationships of Caniformia (order Carnivora). Syst Biol, 2011, 60: 175–187 Article Google Scholar