Direct evidence for selective modulation of psbA, rpoA, rbcL and 16S RNA stability during barley chloroplast development (original) (raw)

• Adams CC, Stern DB: Control of mRNA stability in chloroplasts by 3′ inverted repeats: effects of stem and loop mutations on degradation of psbA mRNA in vitro. Nucl Acids Res 18: 6003–6010 (1990).
  Google Scholar
• Barkan A: Tissue-dependent plastid RNA splicing in maize: transcripts from four plastid genes are predominontly unspliced in leaf meristems and roots. Plant Cell 1: 437–445 (1989).
  Article PubMed Google Scholar
• Baumgartner BJ, Rapp JC, Mullet JE: Plastid transcription activity and DNA copy number increase early in barley chloroplast development. Plant Physiol 89: 1011–1018 (1989).
  Google Scholar
• Baumgartner BJ, Rapp JC, Mullet JE: Plastid genes encoding the transcription/translation apparatus are differentially transcribed early in barley chloroplast development: evidence for selective stabilization of psbA mRNA. Plant Physiol 101: 781–791 (1993).
  PubMed Google Scholar
• Bedbrook JR, Link G, Coen DM, Bogorad L, Rich A: Maize plastid gene expressed during photoregulated development. Proc Natl Acad Sci USA 75: 3060–3064 (1978).
  Google Scholar
• Belasco JG, Beatty JT, Adams CW, vonGabin A, Cohen SN: Differential expression of photosynthesis genes in R. capsulata results from segmental differences in stability within the polycistronic rxcA transcript. Cell 40: 171–181 (1985).
  Article PubMed Google Scholar
• Berends T, Gamble PE, Mullet JE: Characterization of the barley chloroplast transcription units containing psaA-psaB and psbD-psbC. Nucl Acids Res 15: 5217–5239 (1987).
  PubMed Google Scholar
• Bernstein PL, Herrick DJ, Prokipcak RD, Ross J: Control of c-myc mRNA half-life in vitro by a protein capable of binding to a coding region stability determinant. Genes Devel 6: 642–654 (1992).
  PubMed Google Scholar
• Berry JO, Carr JP, Klessig DF: mRNAs encoding ribulose-1,5-bisphosphate carboxylase remain bound to polysomes but are not translated in amaranth seedlings transferred to darkness. Proc Natl Acad Sci USA 85: 4190–4194 (1988).
  Google Scholar
• Boyer SK, Mullet JE: Pea chloroplast tRNALys(UUU) gene: transcription and analysis of an intron-containing gene. Photosyn Res 17: 7–22 (1988).
  Google Scholar
• Brawerman G: Determinants of messenger RNA stability. Cell 48: 5–6 (1987).
  Article PubMed Google Scholar
• Båga M, Göransson M, Normark S, Uhlin BE: Processed mRNA with differential stability in the regulation of E. coli pilin gene expression. Cell 52: 197–206 (1988).
  Article PubMed Google Scholar
• Cannistraro VJ, Subbarao MN, Kennell D: Specific endonucleolytic cleavage sites for decay of Escherichia coli mRNA. J Mol Biol 192: 257–274 (1986).
  PubMed Google Scholar
• Danon A, Mayfield SPY: Light regulated translational activators: identification of chloroplast gene specific mRNA binding proteins. EMBO J 10: 3993–4001 (1991).
  PubMed Google Scholar
• Dean C, Leech RM: Genome expression during normal leaf development. Plant Physiol 70: 1605–1608 (1982).
  Google Scholar
• Deng X-W, Gruissem W: Control of plastid gene expression during development: The limited role of transcriptional regulation. Cell 49: 379–387 (1987).
  Article PubMed Google Scholar
• Deng X-W, Gruissem W: Constitutive transcription and regulation of gene expression in non-photosynthetic plastids of higher plants. EMBO J 7: 3301–3308 (1988).
  Google Scholar
• Dierstein R: Synthesis of pigment-binding protein in toluene-treated Rhodopseudomonas capsulata and in cell-free systems. FEBS Lett 138: 509–518 (1984).
  Google Scholar
• Drapier D, Girard-Bascou J, Wollman F-A: Evidence of nuclear control of the expression of the atpA and atpB chloroplast genes in Chlamydomonas. Plant Cell 4: 283–295 (1992).
  Article PubMed Google Scholar
• Fourney RM, Miyakoshi J, Days RSIII., Paterson MC: Northern blotting: efficient RNA staining and transfer. Focus 10: 5–7 (1987).
  Google Scholar
• Gamble PE, Klein RR, Mullet JE: Illumination of eight-day-old dark-grown barley seedlings activates chloroplast translation. In: Briggs WR (ed) Photosynthesis, pp. 285–298. Alan R. Liss, New York (1989).
  Google Scholar
• Graves RA, Pandey NB, Chodchoy N, Marzluff WF: Translation is required for regulation of histone mRNA degradation. Cell 48: 615–626 (1987).
  Article PubMed Google Scholar
• Hess WR, Prombona A, Fieder B, Subramanian AR, Böner T: Chloroplast _rps_15 and the _rpo_B/C1/C2 gene cluster are strongly transcribed in ribosome-deficient plastids: evidence for a functioning non-chloroplast-encoded RNA polymerase. EMBO J 12: 563–571 (1993).
  PubMed Google Scholar
• Hiratsuka J, Shimada H, Whittier R, Ishibashi T, Sakamoto M, Mori M, Kondo C, Honji Y, Sun C-R, Meng B-Y, Li Y-Q, Kanno A, Nishizawa Y, Hirai A, Shinozaki K, Sugiura M: The complete sequence of the rice (Oryza sativa) chloroplast genome: intermolecular recombination between distinct tRNA genes accounts for a major plastid DNA inversion during the evolution of the cereals. Mol Gen Genet 217: 185–194 (1989).
  PubMed Google Scholar
• Hird SM, Byer TA, Gray JC: Nucleotide sequence of the rpoA gene in wheat chloroplast DNA. Nucl Acids Res 17: 6394 (1989).
  PubMed Google Scholar
• Hsu-Ching C, Stern DB: Specific binding of chloroplast proteins in vitro to the 3′ untranslated region of spinach chloroplast petD mRNA. Mol Cell Biol 11: 4380–4388 (1991).
  PubMed Google Scholar
• Klaff P, Gruissem W: Changes in chloroplast mRNA stabiity during leaf development. Plant Cell 3: 517–529 (1991).
  Article PubMed Google Scholar
• Klein R, Mullet JE: Control of gene expression during higher plant chloroplast biogenesis. J Biol Chem 262: 4341–4348 (1987).
  PubMed Google Scholar
• Klein RR, Mullet JE: Light-induced transcription of chloroplast genes. PsbA transcription is differentially enhanced in illuminated barley. J Biol Chem 265: 1895–1902 (1990).
  PubMed Google Scholar
• Klug G, Adams CW, Belasco J, Deorge B, Cohen SN: Biological consequences of segmental alterations in mRNA stability: effects of deletion of the intercistronic hairpin loop region of the Rhodobacter capsulatus puf operon. EMBO J 6: 3515–3520 (1987).
  PubMed Google Scholar
• Krupinska K, Apel K: Light-induced transformation of etioplasts to chloroplasts of barley without transcriptional control of plastid gene expression. Mol Gen Genet 219: 467–473 (1989).
  Article Google Scholar
• Kuchka MR, Goldschmidt-Clermont M, vanDillewijn J, Rochaix J-D: Mutation at the Chlamydomonas nuclear NAC2 locus specifically affects stability of the chloroplast _psb_D transcript encoding polypeptide D2 of PS II. Cell 58: 869–876 (1989).
  Article PubMed Google Scholar
• Lim LW, Kennell D: Models for decay of Escherichia coli lac messenger RNA and evidence for inactivating cleavages between its messages. J Mol Biol 135: 369–390 (1979).
  PubMed Google Scholar
• Link G: Enhanced expression of a distinct plastid DNA region in mustard seedlings by continuous far-red light. Planta 152: 379–380 (1981).
  Google Scholar
• Lundberg U, vonGabain A, Melefors Ö: Cleavages in the 5′ region of the _omp_A and bla mRNA control stability: studies with an E. coli mutant altering mRNA stability and a novel endoribonuclease. EMBO J 9: 2731–2741 (1990).
  PubMed Google Scholar
• Mackie GA: Posttranscriptional regulation of ribosomal protein S20 and stability of the S20 mRNA species. J Bact 169: 2697–2701 (1987).
  PubMed Google Scholar
• Mathews DE, Durbin RD: Tagetitoxin inhibits RNA synthesis directed bt RNA polymerases from chloroplasts and Escherichia coli. J Biol Chem 265: 493–498 (1990).
  PubMed Google Scholar
• Mattoo AK, Marder JB, Edelman M: Dynamics of the photosystem II reaction center. Cell 56: 241–246 (1989).
  Article PubMed Google Scholar
• Mott JE, Galloway JL, Platt T: Maturation of Escherichia coli tryptophan operon mRNA evidence for 3′ exonucleolytic processing after rho-dependent termination. EMBO J 4: 1887–1891 (1985).
  PubMed Google Scholar
• Mullet JE, Klein RR: Transcription and RNA stability are important determinants of higher plant chloroplast RNA levels. EMBO J 6: 1571–1579 (1987).
  Google Scholar
• Mullet JE, Klein PG, Klein RR: Chlorophyll regulates accumulation of the plastid-encoded chlorophyll apoproteins CP43 and D1 by increasing apoprotein stability. Proc Natl Acad Sci USA 87: 4038–4042 (1990).
  PubMed Google Scholar
• Mullet JE, Orozco EMJr, Chua N-H: Multiple transcripts for higher plant _rbc_L and _atp_B genes and localization of the transcription initiation site of the _rbc_L gene. Plant Mol Biol 4: 39–54 (1985).
  Google Scholar
• Newbury SF, Smith NH, Higgins CF: Differential mRNA stability controls relative gene expression within a polycistronic operon. Cell 51: 1131–1143 (1987).
  Article PubMed Google Scholar
• Newbury SF, Smith NH, Robinson EC, Hiles ID, Higgins CF: Stabilization of translationally active mRNA by prokaryotic REP sequences. Cell 48: 297–310 (1987).
  Article PubMed Google Scholar
• Ngernprasirtsiri J, Kobayashi H, Akazawa T: DNA methylation is a determinative element of photosynthesis gene expression in amyloplasts from liquid-cultured cells of sycamore (Acer pseudoplatanus L.). Cell Struct Funct 15: 285–293 (1990).
  PubMed Google Scholar
• Palmer JD: Contrasting modes and tempos of genome evolution in land plant organelles. Trends Genet 6: 115–120 (1990).
  Article PubMed Google Scholar
• Portier C, Dondon L, Grunberg-Manago M, Régnier P: The first step in the functional inactivation of the Escherichia coli polynucleotide phosphorylase messenger is a ribonuclease III processing at the 5′ end. EMBO J 6: 2165–2170 (1987).
  PubMed Google Scholar
• Purton S, Gray JC: The plastid rpoA gene encoding a protein homologous to the bacterial RNA polymerase alpha subunit is expressed in pea chloroplasts. Mol Gen Genet 217: 77–84 (1989).
  Article PubMed Google Scholar
• Rapp JC, Baumgartner BJ, Mullet JE: Quantitative analysis of transcription and RNA levels of 15 barley chloroplast genes: transcription rates and mRNA levels vary over 300-fold; predicted mRNA stabilities vary 30-fold. J Biol Chem 267: 21404–21411 (1992).
  PubMed Google Scholar
• Rapp JC, Mullet JE: Chloroplast transcription is required to express the nuclear genes rbcS and cab. Plastid DNA copy number is regulated independently. Plant Mol Biol 17: 813–823 (1991).
  PubMed Google Scholar
• Ruf M, Kössel H: Structure and expression of the gene coding for the alpha-subunit of DNA-dependent RNA polymerase from the chloroplast genome of Zea mays. Nucl Acids Res 16: 5741–5754 (1988).
  PubMed Google Scholar
• Schmeissner U, McKenney K, Rosenberg M, Court D: Removal of a terminator structure by RNA processing regulates int gene expression. J Mol Biol 176: 39–53 (1984).
  PubMed Google Scholar
• Schmidt GW, Mishkind ML: Rapid degradation of unassembled ribulose 1,5-bisphosphate carboxylase small subunits in chloroplasts. Proc Natl Acad Sci USA 80: 2632–2636 (1983).
  Google Scholar
• Schuster G, Gruissem W: Chloroplast mRNA 3′ end processing requires a nuclear-encoded RNA-binding protein. EMBO J 10: 1493–1502 (1991).
  PubMed Google Scholar
• Sexton TB, Christopher DA, Mullet JE: Light-induced switch in barley _psb_D-_psb_C promoter utilization: A novel mechanism regulating chloroplast gene expression. EMBO J 9: 4485–4494 (1990).
  PubMed Google Scholar
• Sexton TB, Jones JT, Mullet JE: Sequence and transcriptional analysis of the barley ctDNA region upstream of _psb_D-_psb_C encoding _trn_K(UUU), _rps_16, _trn_Q(UUG), _psb_K, _psb_I and _trn_S(GCU). Curr Genet 17: 445–454 (1990).
  PubMed Google Scholar
• Shinozaki K, Deno H, Sugita M, Kuramitsu S, Sugiura M: Intron in the gene for the ribosomal protein S16 of tobacco chloroplast and its conserved boundary sequences. Mol Gen Genet 202: 1–5 (1986).
  Article Google Scholar
• Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchii-Shinozaki K, Ohto C, Torazawa K, Meng B-Y, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M: The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J 5: 2043–2049 (1986).
  Google Scholar
• Sieburth LE, Berry-Lowe S, Schmidt GW: Chloroplast RNA stability in Chlamydomonas: Rapid degradation of _psb_B and _psb_C transcripts in two nuclear mutants. Plant Cell 3: 175–189 (1991).
  Article PubMed Google Scholar
• Sijben-Müller G, Hallick RB, Alt J, Westhoff P, Herrmann RG: Spinach plastid genes coding for initiation factor IF-1, ribosomal protein S11 and RNA polymerase alpha-subunit. Nucl Acids Res 14: 1029–1044 (1986).
  PubMed Google Scholar
• Stern DB, Gruissem W: Control of plastid gene expression: 3′ inverted repeats act as mRNA processing and stabilizing elements, but do not terminate transcription. Cell 51: 1145–1157 (1987).
  Article PubMed Google Scholar
• Stern DB, Jones H, Gruissem W: Function of plastid mRNA 3′ inverted repeats: RNA stabilization and gene-specific protein binding. J Biol Chem 264: 18742–18750 (1989).
  PubMed Google Scholar
• Thach RE, Hershey JWB, Kolakofsky D, Dewey KF, Remold-O'Donnel E: Purification and properties of initiations factors F1 and F2. Cold Spring Harbor Symp Quant Biol 34: 277–284 (1969).
  PubMed Google Scholar
• Tinoco IJ, Borer PN, Dengler B, Levine MD, Uhlenbeck QC, Crothers DM, Graalla J: Improved estimation of secondary structure in ribonucleic acids. Nature New Biol 246: 40–41 (1973).
  PubMed Google Scholar
• Westhoff P, Herrmann RB: Complex RNA maturation in chloroplasts. The _psb_B operon from spinach. Eur J Biochem 171: 551–564 (1988).
  PubMed Google Scholar
• Wong HC, Chang S: Identification of a positive retroregulator that stabilizes mRNAs in bacteria. Proc Natl Acad Sci USA 83: 3233–3237 (1986).
  PubMed Google Scholar
• Yen TJ, Machlin PS, Cleveland DW: Autoregulated instability of beta-tubulin mRNAs by recognition of the nascent amino terminus of beta-tubulin. Nature 334: 580–585 (1988).
  Article PubMed Google Scholar
• Zurawski G, Bottomley W, Whitfeld PR: Structures of the genes for the beta and epsilon subunits of spinach chloroplast ATPase indicate a dicistronic mRNA and an overlapping translation stop/start signal. Proc Natl Acad Sci USA 79: 6260–6264 (1982).
  Google Scholar
• Zurawski G, Clegg MT: The barley chloroplast DNA _atp_BE, _trn_M2, and _trn_V1 loci. Nucl Acids Res 12: 2549–2559 (1984).
  PubMed Google Scholar