Partial sequence of ribulose-1,5-bisphosphate carboxylase/oxygenase and the phylogeny of Prochloron and Prochlorococcus (Prochlorales) (original) (raw)
- Adachi J, Hasegawa M (1993) MOLPHY (programs for molecular phylogenetics) 2.1.1. Institute of Statistical Mathematics, Tokyo
Google Scholar - Bej AK, Mahbubani MH, Dicesare JL, Atlas RM (1991) Polymerase chain reaction-gene probe detection of microorganisms by using filter-concentrated samples. Appl Environ Microbiol 57:3529–3534
Google Scholar - Bold HC, Wynne MJ (1985) (eds) Introduction to the algae, 2nd ed. Prentice-Hall, New Jersey
Google Scholar - Burger-Wiersma T, Matthijs HCP (1990) The biology of the Prochlorales. In: Codd GA, Dijkhuizen L, Tabita FR (eds) Autotrophic microbiology and one-carbon metabolism. Kluwer Academic Publishers, The Netherlands, pp 1–24
Google Scholar - Burger-Wiersma T, Stal LJ, Mur LR (1989) Prochlorothrix hollandica gen. nov.: a filamentous oxygenic photoautotrophic prokaryote containing chlorophylls a and b: assignment to Prochlorothrichaceae fam. nov. and order Prochlorales Flonrenzano, Balloni and Materassi 1986, with emendation of the ordinal description. Int J Syst Bacteriol 39:250–257
Google Scholar - Burger-Wiersma T, Veenhuis M, Korthals HJ, Van de Wiel CCM, Mur LR (1986) A new prokaryote containing chlorophylls a and b. Nature 320:262–264
Google Scholar - Chisholm SW, Olson RJ, Zettler ER, Goericke R, Waterbury JB, Welschmeyer NA (1988) A novel free-living prochlorophyte abundant in the oceanic euphoric zone. Nature 334:340–343
Google Scholar - Chisholm SW, Frankel SL, Goericke R, Olson RJ, Palenik B, Waterbury JB, West-Johnsrud L, Zettler ER (1992) Prochlorococcus marinus nov. gen. nov. sp.: an oxyphototrophic marine prokaryote containing divinyl chlorophyll a and b. Archiv Microbiol 157:297–300
Google Scholar - Curtis SE, Haselkorn R (1983) Isolation and sequence of the gene for the large subunit of ribulose-1,5-bisphosphate carboxylase from the cyanobacterium Anabaena 7120. Proc Natl Acad Sci USA 80: 1835–1839
Google Scholar - Dionisio-Sese M, Shimada A, Maruyama T, Miyachi S (1993) Carbonic anhydrase activity of Prochloron sp. isolated from an ascidian host. Arch Microbiol 159:1–5
Google Scholar - Dron M, Rahire M, Rochaix J-D (1982) Sequence of the chloroplast DNA region of Chlamydomonas reinhardii containing the gene of the large subunit of ribulose-1,5-bisphosphate carboxylase and parts of its flanking genes. J Mol Biol 162:775–793
Google Scholar - Dzelzkalns VA, Szekeres M, Mulligan BJ (1988) The molecular biology of cyanobacteria. In: Shaw CH (ed) Plant molecular biology IRL, Washington, DC, pp 277–299
Google Scholar - Felsenstein J (1993) PHYLIP (phylogeny inference package) 3.5.1c. University of Washington, Seattle, WA
Google Scholar - Fujiwara S, Iwahashi H, Someya J, Nishikawa S (1993) Structure and cotranscription of the plastid-encoded _rbc_L and _rbc_S genes of Pleurochrysis carterae (Prymnesiophyta). J Phycol 29:347–355
Google Scholar - Goericke R, Repeta DJ (1992) The pigments of Prochlorococcus marinus: the presence of divinyl chlorophyll a and b in a marine procaryote. Limnol Oceanogr 37:425–433
Google Scholar - Golden SS, Morden CW, Greer KL (1993) Comparison of sequences and organization of photosynthesis genes among the prochlorophyte Prochlorothrix hollandica, cyanobacteria, and chloroplasts. In: Lewin RA (ed) Origins of plastids. Chapman & Hall, New York, pp 141–158
Google Scholar - Hasegawa M, Hashimoto T (1993) Ribosomal RNA trees misleading? Nature 361:23
Google Scholar - Higgins DG, Bleasby AJ, Fuchs R (1992) CLUSTAL V: improved software for multiple sequence alignment. Comput Appl Biosci 8:189–191
Google Scholar - Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8:275–282
Google Scholar - Kimura M (1983) The neutral theory of molecular evolution. Cambridge University Press, Cambridge
Google Scholar - Kishino H, Miyata T, Hasegawa M (1990) Maximum likelihood inference of protein phylogeny and the origin of chloroplasts. J Mol Evol 31:151–160
Google Scholar - Kusano T, Takeshima T, Inoue C, Sugawara K (1991) Evidence for two sets of structural genes coding for ribulose bisphosphate carboxylase in Thiobacillus ferrooxidans. J Bacteriol 173:7313–7323
Google Scholar - Larkum AWD (1992) Evolution of chlorophylls, light harvesting systems and photoreaction centres. In: Murata N (ed) Research in photosynthesis, vol III. Kluwer Academic Publishers, The Netherlands, pp 475–482
Google Scholar - Lewin RA (1975) A marine Synechocystis (Cyanophyta, Chroococcales) epizoic on ascidians. Phycologia 14:153–160
Google Scholar - Lewin RA (1976) Prochlorophyta as a proposed new division of algae. Nature 261:697–698
Google Scholar - Lewin RA (1977) Prochloron, type genus of the Prochlorophyta. Phycologia 16:217
Google Scholar - Lewin RA (1981) Prochloron and the theory of symbiogenesis. Ann NY Acad Sci 361:325–329
Google Scholar - Lewin RA, Cheng L (eds) (1989) Prochloron, a microbial enigma. Chapman & Hall, New York
Google Scholar - Lewin RA, Withers NW (1975) Extraordinary pigment composition of a prokaryotic alga. Nature 256:735–737
Google Scholar - Lockhart PJ, Beanland TJ, Howe CJ, Larkum AWD (1992) Sequence of Prochloron didemni atpBE and the inference of chloroplast origins. Proc Natl Acad Sci USA 89:2742–2746
Google Scholar - Lockhart PJ, Penny D (1992) The problem of GC content, evolutionary trees and the origins of chl-a/b photosynthetic organelles: are the prochlorophytes a eubacterial model for higher plant photosynthesis? In: Murata N (ed) Research in photosynthesis, vol III. Kluwer Academic Publishers, The Netherlands, pp 499–505
Google Scholar - MacKay RM, Salgado D, Bonen L, Stackebrandt E, Doolittle WF (1982) The 5S ribosomal RNAs of Paracoccus denitrificans and Prochloron. Nucleic Acids Res 10:2963–2970
Google Scholar - Morden CW, Golden SS (1989a) psbA genes indicate common ancestry of prochlorophytes and chloroplasts. Nature 337:382–385
Google Scholar - Morden CW, Golden SS (1989b) psbA genes indicate common ancestry of prochlorophytes and chloroplasts, corrigendum. Nature 339:400
Google Scholar - Morden CW, Golden SS (1991) Sequence analysis and phylogenetic reconstruction of the genes encoding the large and small subunits of ribulose-1,5-bisphosphate carboxylase/oxygenase from the chlorophyll _b_-containing prokaryote Prochlorothrix hollandica. J Mol Evol 32:379–395
Google Scholar - Murata N, Sato N (1983) Analysis of lipids in Prochloron sp.: occurrence of monoglucosyl diacylglycerol. Plant Cell Physiol 24:133–138
Google Scholar - Palenik B, Haselkorn R (1992) Multiple evolutionary origins of prochlorophytes, the chlorophyll _b_-containing prokaryotes. Nature 355:265–267
Google Scholar - Ritland K, Clegg MT (1987) Evolutionary analysis of plant DNA sequences. Am Nat 130:S74–5100
Google Scholar - Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
Google Scholar - Seckbach J (1991) Systematic problems with Cyanidium caldarium and Galdieria sulphuraria and their implications for molecular biology studies. J Phycol 27:794–796
Google Scholar - Seewaldt E, Stackebrandt E (1982) Partial sequence of 16S ribosomal RNA and the phylogeny of Prochloron. Nature 295:618–620
Google Scholar - Shinozaki K, Yamada C, Takahata N, Sugiura M (1983) Molecular cloning and sequence analysis of the cyanobacterial gene for the large subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase. Proc Natl Acad Sci USA 80:4050–4054
Google Scholar - Swift H, Palenik B (1993) Prochlorophyte evolution and the origin of chloroplasts: morphological and molecular evidence. In: Lewin RA (ed) Origin of plastids. Chapman & Hall, New York, pp 123–139
Google Scholar - Turner S, Burger-Wiersma T, Giovannoni SJ, Mur LR, Pace NR (1989) The relationship of a prochlorophyte Prochlorothrix hollandica to green chloroplasts. Nature 337:380–382
Google Scholar - Ueda K, Shibuya H (1993) Molecular phylogeny of rbcL and its bearing on the origin of plastids: bacteria or cyanophyta? In: Sato S, Ishida M, Ishikawa H (eds) Endocytobiology V. Tübingen Univ. Press, Tübingen, pp 369–376
Google Scholar - Urbach E, Robertson D, Chisholm SW (1992) Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiation. Nature 355:267–270
Google Scholar - Valentin K, Zetsche K (1990a) Nucleotide sequence of the gene for the large subunit of Rubisco from _Cyanophora paradoxa_—phylogenetic implications. Curr Genet 18:199–202
Google Scholar - Valentin K, Zetsche K (1990b) Structure of the Rubisco operon from the unicellular red alga Cyanidium caldarium: evidence for a polyphyletic origin of the plastids. Mol Gen Genet 222:425–430
Google Scholar - Viale AM, Kobayashi H, Akazawa T (1989) Expressed genes for plant-type ribulose 1,5-bisphosphate carboxylase/oxygenase in the photosynthetic bacterium Chromatium vinosum, which possesses two complete sets of the genes. J Bacteriol 171:2391–2400
Google Scholar - Yaguchi T, Chung SY, Igarashi Y, Kodama T (1993) Cloning, sequence and overexpression of the thermophilic cyanobacterium gene for the ribulose-1,5-bisphosphate carboxylase/oxygenase. J Ferment Bioeng 75:1–8
Google Scholar - Withers NW, Vidaver W, Lewin RA (1978) Pigment composition, photosynthesis and fine structure of a non-blue-green prokaryotic algal symbiont (Prochloron sp.) in a didemnid ascidian from Hawaiian waters. Phycologia 17:167–171
Google Scholar - Woese CR (1987) Bacterial evolution. Microbiol Rev 51:221–271
Google Scholar