The taxonomy of binding sites in proteins (original) (raw)

References

  1. Perutz, M. F., Rossmann, M. G., Cullis, A. F., Muirhead, H., Will, G. and North, A. C. T., 1960. Nature (London) 185, 416–422.
    Google Scholar
  2. Fitch, W. M. and Margoliash, E., 1967. Science 155, 279–284; and many subsequent papers.
    CAS PubMed Google Scholar
  3. Holbrook, J. J., Liljas, A., Steindel, S. J. and Rossmann, M. G., 1975. in The Enzymes (Boyer, P. D., editor) 3rd edition, Vol. XI, pp. 191–292, Academic Press, New York.
  4. Buehner, M., Ford, G. C., Moras, D., Olsen, K. W. and Rossmann, M. G., 1973. Proc. Natl. Acad. Sci. U.S. 70, 3052–3054.
    Google Scholar
  5. Rao, S. T. and Rossmann, M. G., 1973. J. Mol. Biol. 76, 241–256.
    Google Scholar
  6. Rossmann, M. G., Moras, D. and Olsen, K. W., 1974. Nature (London) 250, 194–199.
    Google Scholar
  7. Eventoff, W. and Rossmann, M. G., 1975. in CRC Critical Reviews in Biochemistry (Fasman, G. D., editor) Vol. 3, pp. 111–140, CRC Press, Cleveland.
  8. Richardson, J. S., Thomas, K. A., Rubin, B. H. and Richardson, D. C., 1975. Proc. Natl. Acad. Sci. U.S. 72, 1349–1353.
    Google Scholar
  9. Richardson, J. S., 1977. Nature (London) 268, 495–500.
    Google Scholar
  10. Richardson, J. S., 1976. Proc. Natl. Acad. Sci. U.S. 73, 2619–2623.
    Google Scholar
  11. Sternberg, M. J. E. and Thornton, J. M., 1977. J. Mol. Biol. 110,269–283.
    Google Scholar
  12. Rossmann, M. G. and Argos, P. (1975) J. Biol. Chem. 250, 7525–7532.
    Google Scholar
  13. Bergsma, J., Hol. W. G. J., Jansonius, J. N., Kalk, K. H., Ploegman, J. H. and Smit, J. D. G., 1975. J. Mol. Biol. 98, 637–643.
    Google Scholar
  14. Phillips, D. C., Sternberg, M. J. E., Thornton, J. M. and Wilson, I. A., 1978. J. Mol. Biol. 119, 329–351.
    Google Scholar
  15. Richardson, J. S., Richardson, D. C., Thomas, K. A., Silverton, E. W. and Davies, D. R., 1976. J. Mol. Biol. 102, 221–235.
    Google Scholar
  16. Levine, M., Muirhead, H., Stammers, D. K. and Stuart, D. I., 1978. Nature (London) 271, 626–630.
    Google Scholar
  17. Tang, J., James, M. N. G., Hsu, I. N., Jenkins, J. A. and Blundell, T. L., 1978. Nature (London) 271, 618–621.
    Google Scholar
  18. Rossmann, M. G. and Argos, P., 1976. J. Mol. Biol. 105, 75–95.
    Google Scholar
  19. Remington, S. J. and Matthews, B. W., 1978. Proc. Natl. Acad. Sci. U.S., 75, 2180–2184.
    Google Scholar
  20. Jukes, T. H. and Cantor, C. R., 1969. in Mammalian Protein Metabolism (Munro, H. N., editor) Vol. III, pp. 21–132, Academic Press, New York.
  21. Sokal, R. R. and Sneath, P. H. A., 1963. Principles of Numerical Taxonomy, W. H. Freeman & Co., San Francisco.
    Google Scholar
  22. Schulz, G. E. and Schirmer, R. H., 1974. Nature (London) 250, 142–144.
    Google Scholar
  23. Sternberg, M. J. E. and Thornton, J. M., 1977. J. Mol. Biol. 113, 401–418.
    Google Scholar
  24. Sternberg, M. J. E. and Thornton, J. M., 1976. J. Mol. Biol. 105, 367–382.
    Google Scholar
  25. Crick, F. H. C., 1952. Nature (London) 170, 882–883.
    Google Scholar
  26. Crick, F. H. C., 1953. Acta Crystallogr. 6, 689–697.
    Google Scholar
  27. Chothia, C., Levitt, M. and Richardson, D., 1977. Proc. Natl. Acad. Sci. U.S. 74, 4130–4134.
    Google Scholar
  28. Levitt, M. and Chothia, C., 1976. Nature (London) 261, 552–558.
    Google Scholar
  29. Rossmann, M. G. and Argos, P. 1977. J. Mol. Biol. 109, 99–129.
    Google Scholar
  30. Ohlsson, I., Nordström, B. and Brändén, C. I., 1974. J. Mol. Biol. 89, 339–354.
    Google Scholar
  31. Rossmann, M. G., Liljas, A., Brändén, C. I. and Banaszak, L. J., 1975. in The Enzymes (Boyer, P. D., editor) 3rd edition, Vol. XI, pp. 61–102, Academic Press, New York.
  32. Matthews, D. A., Alden, R. A., Bolin, J. T., Filman, D. J., Freer, S. T., Hamlin, R., Hot, W. G. J., Kisliuk, R. L., Pastore, E. J., Plant, L. T., Xuong, N. and Kraut, J., 1978. J. Biol. Chem., in press.
  33. Wootton, J. C., 1974. Nature (London) 252, 542–546.
    Google Scholar
  34. Otto, J., 1970. Ph.D. Thesis, Ludwig-MaximiliansUniversität, München, Germany.
    Google Scholar
  35. Matthews, D. A., Alden, R. A., Bolin, J. T., Freer, S. T., Hamlin, R., Xuong, N., Kraut, J., Poe, M., Williams, M. and Hoogsteen, K., 1977. Science 197, 452–455.
    Google Scholar
  36. Stellwagen, E., Cass, R., Thompson, S. T. and Woody, M., 1975. Nature (London) 257, 716–718.
    Google Scholar
  37. Garavito, R. M., Rossmann, M. G., Argos, P. and Eventoff, W., 1977. Biochemistry 16, 5065–5071.
    Google Scholar
  38. Matthews, B. W. and Remington, S. J., 1974. Proc. Natl. Acad. Sci. U.S. 71, 4178–4182.
    Google Scholar
  39. Johnson, L. N. and Phillips, D. C., 1965. Nature (London) 206, 761–763.
    Google Scholar
  40. Blake, C. C. F., Johnson, L. N., Mair, G. A.; North, A. C. T., Phillips. D. C. and Sarma, V. R.; 1967. Proc. Roy. Soc. B167, 378–388.
    Google Scholar
  41. Tsugita, A. and Inouye, M., 1968. J. Mol. Biol. 37, 201–212.
    Google Scholar
  42. Imoto, T., Johnson, L. N., North, A. C. T., Phillips, D. C. and Rupley, J. A., 1972. in The Enzymes (Boyer, P. D., editor) 3rd edition, Vol. VII, pp. 665–868, Academic Press, New York.
  43. Blake, C. C. F., Koenig, D. F., Mair, G. A., North, A. C. T., Phillips, D. C. and Sarma, V. R., 1965. Nature (London) 206, 757–761.
    Google Scholar
  44. Ford, L. O., Johnson, L. N., Machin, P. A., Phillips, D. C. and Tjian, R., 1974. J. Mol. Biol. 88, 349–371.
    Google Scholar
  45. Ghuysen, J. M., 1968. Bacteriol. Rev. 32, 425–464.
    Google Scholar
  46. Tsugita, A., 1971. in The Enzymes (Boyer, P. D., editor) 3rd edition, Vol. V, pp. 343–411, Academic Press, New York.
  47. Browne, W. J., North, A. C. T., Phillips, D. C., Brew, K., Vanaman, T. C. and Hill, R. L., 1969. J. Mol. Biol. 42, 65–86.
    Google Scholar
  48. Dickerson, R. E. and Timkovich, R.,1975. in The Enzymes (Boyer, P. D., editor) 3rd edition, Vol. XI, pp. 397–547, Academic Press, New York.
  49. Dickerson, R. E., 1978. in Proceedings of the International Symposium on Biomolecular Structure, Conformation, Function and Evolution, Madras, India, in press.
  50. Mathews, F. S., Levine, M. and Argos, P., 1972. J. Mol. Biol. 64, 449–464.
    Google Scholar
  51. Mathews, F. S., Argos, P. and Levine, M., 1971. Cold Spring Harbor Symp. Quant. Biol. 36, 387–395.
    Google Scholar
  52. Hagihara, B., Sato, N. and Yamanaka, T., 1975. in The Enzymes (Boyer, P. D., editor) 3rd edition, Vol. XI, pp. 549–593, Academic Press, New York.
  53. Oshino, N., Imai, Y. and Sato, R., 1971. J. Biochem. (Tokyo) 69, 155–167.
    Google Scholar
  54. Holloway, P. W. and Katz, J. T., 1972. Biochemistry 11, 3689–3696.
    Google Scholar
  55. Almassy, R. J. and Dickerson, R. E., 1978. Proc. Natl. Acad. Sci. U.S. 75, 2674–2678.
    Google Scholar
  56. Perutz, M. F., Muirhead, H., Cox, J. M., Goaman, L. C. G., Mathews, F. S., McGandy, E. L. and Webb, L. E., 1968. Nature (London) 219, 29–32.
    Google Scholar
  57. Padlan, E. A. and Love, W. E., 1974. J. Biol. Chem. 249, 4067–4078.
    Google Scholar
  58. Dayhoff, M. O., 1972. in Atlass of Protein Sequence and Structure, Vol. 5, pp. D369-D370.
    Google Scholar
  59. Czerwinski, E. W. and Mathews, F. S., 1974. J. Mol. Biol. 86, 49–57.
    Google Scholar
  60. Itagaki, E. and Hager, L. P., 1966. J. Biol. Chem. 241, 3687–3695.
    Google Scholar
  61. Adman, E. T., Sieker, L. C. and Jensen, L. H., 1973. J. Biol. Chem. 248, 3987–3996.
    Google Scholar
  62. Sicker, L. C., Adman, E. and Jensen, L. H., 1972. Nature (London) 235, 40–42.
    Google Scholar
  63. Carter, C. W. Jr., Kraut, J., Freer, S. T., Xuong, N., Alden, R. A. and Bartsch, R. G., 1974. J. Biol. Chem. 249, 4212–4225.
    Google Scholar
  64. Carter, C. W. Jr., 1977. J. Biol. Chem. 252, 7802–7811.
    Google Scholar
  65. Kraut, J., Robertus, J. D., Birktoft, J. J., Alden, R. A., Wilcox, P. E. and Powers, J. C., 1971. Cold Spring Harbor Symp. Quant. Biol. 36, 117–123.
    Google Scholar
  66. Kannan, K. K., Petef, M., Fridborg, K., Cid-Dresdner, H. and Lövgren, S., 1977. FEBS Lett. 73, 115–119.
    Google Scholar
  67. Wolpert, H. R., Strader, C. D. and Khalifah, R. G., 1977. Biochemistry 16, 5717–5721.
    Google Scholar
  68. Boiwe, T. and Brändén, C. I., 1977. Eur. J. Biochem. 77, 173–179.
    Google Scholar
  69. Colman, P. M., Jansonius, J. N. and Matthews, B. W., 1972. J. Mol. Biol. 70, 701–724.
    Google Scholar
  70. Matthews, B. W., Weaver, L. H. and Kester, W. R., 1974. J. Biol. Chem. 249, 8030–8044.
    Google Scholar
  71. Lipscomb, W. N., 1974. Tetrahedron 30, 1725–1732.
    Google Scholar
  72. Lipscomb, W. N., Hartsuck, J. A., Reeke, G. N. Jr., Quiocho, F. A., Bethge, P. H., Ludwig, M. L., Steitz, T. A., Muirhead, H. and Coppola, J. C., 1968. Brookhaven Symp. Biol. 21, 24–90.
    Google Scholar
  73. Lipscomb, W. N., Reeke, G. N. Jr., Hartsuck, J. A., Quiocho, F. A. and Bethge, P. H., 1970. Phil. Trans. Roy. Soc. Lond. B257, 177–214.
    Google Scholar
  74. Argos, P., Garavito, R. M., Eventoff, W., Rossmann, M. G. and Branden, C. I., 1978. J. Mol. Biol., in press.
  75. Argos, P., Garavito, R. M., Eventoff, W. and Rossmann, M. G., 1978. in Proceedings of the International Symposium on Biomolecular Structure, Conformation, Function and Evolution, Madras, India, in press.
  76. Weaver, L. H., Kester, W. R. and Matthews, B. W. 1977. J. Mol. Biol. 114, 119–132.
    Google Scholar
  77. Pangburn, M. K. and Walsh, K. A., 1975. Biochemistry 14, 4050–4054.
    Google Scholar
  78. Brändén, C. I., Jörnvall, H., Eklund, H. and Furugren, B., 1975. in The Enzymes (Boyer, P. D., editor) 3rd edition, Vol. XI, pp. 103–190, Academic Press, New York.
  79. Dworschack, R. T. and Plapp, B. V., 1977. Biochemistry 16, 111–116.
    Google Scholar
  80. Lindskog, S., Henderson, L. E., Kannan, K. K., Liljas, A., Nyman, P. O. and Strandberg, B., 1971. in The Enzymes (Boyer, P. D., editor) 3rd edition, Vol. V, pp. 587–665, Academic Press, New York.
  81. Navon, G., Shulman, R. G., Wyluda, B. J. and Yamane, T., 1970. J. Mol. Biol. 51, 15–30.
    Google Scholar
  82. Woolley, P., 1975. Nature (London) 258, 677–682.
    Google Scholar
  83. Kester, W. R. and Matthews, B. W., 1977. J. Biol. Chem. 252, 7704–7710.
    Google Scholar
  84. Verpoorte, J. A., Mehta, S. and Edsall, J. T., 1967. J. Biol. Chem. 242, 4221–4229.
    Google Scholar
  85. Kannan, K. K., Notstrand, B., Fridborg, K., Lövgren, S., Ohlsson, A. and Petef, M., 1975. Proc. Natl. Acad. Sci. U.S. 72, 51–55.
    Google Scholar
  86. Carlsson, U., Aasa, R., Henderson, L. E., Jonsson, B. H. and Lindskog, S., 1975. Eur. J. Biochem. 52, 25–36.
    Google Scholar
  87. Sweet, R. M., Wright, H. T., Janin, J., Chothia, C. H. and Blow, D. M., 1974. Biochemistry 13, 4212–4228.
    Google Scholar
  88. Richmond, T. J. and Richards, F. M., 1978. J. Mol. Biol. 119, 537–555.
    Google Scholar

Download references