The evolutionary transition from RNA to DNA in early cells (original) (raw)
Adman R, Grossman L (1965) Action of the RNA polymerase on UV-irradiated poly(U). Fed Proc 24:602 Google Scholar
Adman R, Grossman L (1967) Template properties of polyribonucleotides containing uracil or modified uracil in the RNA polymerase reaction. J Mol Biol 23:417–439 PubMed Google Scholar
Awramik SM, Schopf JW, Walter MR (1983) Filamentous bacteria from the Archean of western Australia. Precambrian Res 20:357–374 Google Scholar
Baltscheffsky H, Alauddin M, Falk G, Lundin M (1987)_Similarities between soluble inorganic pyrophosphatase from yeast and some nucleotide-binding polypeptides. Acta Chem Scand B 41:106–107 PubMed Google Scholar
Bertani LE, Häggmark A, Reichard P (1963) Enzymatic synthesis of deoxyribonucleotides. II. Formation and interconversion of deoxyuridine phosphates. J Biol Chem 238:3407–3413 PubMed Google Scholar
Bridson PK, Fakhrai H, Lornmann R, Orgel LE, van Roode M (1981) Template-directed synthesis of oligoguanylic acids-metal ions catalysis. In: Wolman Y (ed) Origins of life. Reidel, Dordrecht, pp 233–239 Google Scholar
Butzow JJ, Eichhorn GL (1965) Interaction of metal ions with nucleic acids and related compounds. V. The relative effect of transition metals. Biopolymers 3:95–103 PubMed Google Scholar
Butzow JJ, Eichhorn GL (1971) Interaction of metal ions with nucleic acids and related compounds. XVII. On the mechanism of degradation of polyribonucleotides by zinc (II) ions. Biochemistry 10:2019–2027 PubMed Google Scholar
Cantó J, Mendoza E (eds) (1983) Memorias del symposio sobre objetos Herbig-Haro. Rev Mex Astron Astrofis, vol 7
Cantor CR, Schimmel PR (1980) Biophysical chemistry. WH Freeman, San Francisco Google Scholar
Canuto VM, Levine JS, Augustssen TR, Imhoff CL (1982) UV radiation from the young sun and levels of of O2 and O3 in the prebiological paleoatmosphere. Nature 296:816–820 Google Scholar
Canuto VM, Levine JS, Augustssen TR, Imhoff CL (1983) Oxygen and ozone in the early Earth's atmosphere. Precambrian Res 20:109–120 Google Scholar
Cerutti P, Ikeda K, Witkop B (1965) The selective photoreduction of uridine in polynucleotides. J Am Chem Soc 87:2505–2507 PubMed Google Scholar
Crick FHC (1968) The origin of the genetic code. J Mol Biol 38:367–379 PubMed Google Scholar
Darnell JE, Doolittle WF (1986) Speculations on the early course of evolution. Proc Natl Acad Sci USA 83:1271–1275 PubMed Google Scholar
Diener TO (1982) Viroids and their interaction with host cells. Annu Rev Microbiol 36:239–258 PubMed Google Scholar
Eichhorn GL, Tarien E, Butzow JJ (1971) Interaction of metal ions with nucleic acids and related compounds. XVI. Specific cleavage effects in the depolymerization of ribonucleic acids by zinc (II) ions. Biochemistry 10:2014–2019 PubMed Google Scholar
Eigen M, Schuster P (1977) The hypercycle-a principle of natural self-organization. Part A: emergence of the hypercycle. Naturwissenschaften 64:541–565 PubMed Google Scholar
Ferris JP, Usher DA (1983) Origins of life. In: Zubay G (ed) Biochemistry. Addison Wesley, Reading MA, pp 1191–1241 Google Scholar
Fersht AR (1979) Fidelity of replication of phage ϕX 174 DNA by DNA polymerase III holoenzyme: spontaneous mutations by misincorporation. Proc Natl Acad Sci USA 76:4946–4950 PubMed Google Scholar
Fersht AR (1983) Enzymic editing mechanisms in protein synthesis and DNA replication. In: Hunt T, Prentis S, Tooze J (eds) DNA makes RNA makes proteins. Elsevier Medical Press, Cambridge, pp 226–232 Google Scholar
Freidberg EC (1985) DNA repair. WH Freeman, San Francisco Google Scholar
Gaustad JE, Vogel SN (1982) High energy solar radiation and the origin of life. Origins of Life 12:3–8 PubMed Google Scholar
Grossman L (1963) The effects of ultraviolet-irradiated polyuridylic acid in cell-free protein synthesis in_Escherichia coli_, II. The influence of specific photoproducts. Proc Natl Acad Sci USA 50:657–664 PubMed Google Scholar
Guerrier-Takada C, Gardiner K, Marsh T, Pace N, Altman S (1983) The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 35:849–857 PubMed Google Scholar
Haldane JBS (1965) Data needed for a blueprint of the first organism. In: Fox SW (ed) The origin of prebiological systems and their molecular matrices. Academic Press, New York, pp 11–15 Google Scholar
Halmann M, Sanchez RA, Orgel LE (1969) Phosphorylation of D-ribose in aqueous solution. J Org Chem 34:3702–3703 Google Scholar
Hartman H, Lawless JG, Morrison P (eds) (1985) The search for the universal ancestors. NASA SP-477, Washington DC
Holland J, Spindler K, Horodyski F, Graban E, Nichol S, VandePol S (1982) Rapid evolution of RNA genomes. Science 215: 1577–1585 PubMed Google Scholar
Joyce GF, Schwartz AW, Miller SL, Orgel LE (1987) The case for an ancestral genetic system involving simple analogues of the nucleotides. Proc Natl Acad Sci USA 84:4398–4402 PubMed Google Scholar
Kamer G, Argos P (1984) Primary structural comparison of RNA-dependent polymerases from plant, animal and bacterial viruses. Nucleic Acids Res 12(18):7269–7282 PubMed Google Scholar
Knoll AH, Barghoorn ES (1977) Archean microfossils showing cell division from the Swaziland system of South Africa. Science 198:396–398 Google Scholar
Kornberg A (1980) DNA replication. WH Freeman, San Francisco Google Scholar
Kruger K, Grabowski PJ, Zaug AJ, Sands J, Gottschlin DE, Cech TR (1982) Self-splicing RNA autoexcision and autocyclization of the ribosomal RNA intervening sequence of_Tetrahymena_. Cell 31:147–157 PubMed Google Scholar
Lammers M, Follmann H (1983) The ribonucleotide reductases—a unique group of metalloenzymes essential for cell proliferation. Struct Bonding 54:27–91 Google Scholar
Lazcano, A (1986) Prebiotic evolution and the origin of cells. Treballs Soc Cat Biol 39:73–103 Google Scholar
Lazcano A, Oró J, Miller SL (1983) Primitive Earth environments: organic syntheses and the origin and early evolution of life. Precambrian Res 20:259–282 Google Scholar
Lazcano A, Valverde V, Fastag J, Gariglio P, Ramírez C, Oró J (1987) Molecular evolution of nucleic acid polymerases. In: Eirich F, Ponnamperuma C (eds) Prebiological organization. Proceedings of the VIII College Park Colloquium on Chemical Evolution (in press)
Lazcano A, Fastag J, Gariglio P, Ramírez C, Oró J (1988) On the early evolution of RNA polymerase. J Mol Evol (in press)
Lindahl T (1982) DNA repair enzymes. Annu Rev Biochem 51:61–87 PubMed Google Scholar
Llaca V, Silva E, Lazcano A, Rangel LM, Gariglio P, Oró J (1987) In search of the ancestral RNA polymerase: an experimental approach. In: Eirich F, Ponnamperuma C (eds) Prebiological organization. Proceedings of the VIII College Park Colloquium on Chemical Evolution (in press)
Loeb LA, Kunkel TA (1982) Fidelity of DNA synthesis. Annu Rev Biochem 51:429–457 PubMed Google Scholar
Mar A, Dworkin J, Oró J (1987) Non-enzymatic synthesis of the coenzymes uridine diphosphate glucose and cytidine diphosphate choline and other phosphorylated metabolic intermediates. Origins of Life and Evolution of the Biosphere (in press)
Margulis L (1981) Symbiosis in cell evolution. WH Freeman, San Francisco Google Scholar
Margulis L, Guerrero R (1988) From origins of life to evolution of microbial communities: a minimalist approach. In: Eirich F, Ponnamperuma C (eds) Prebiological organization. Proceedings of the VIII College Park Colloquium on Chemical Evolution (in press)
Margulis L, Sagan D (1986) The origins of sex. Yale University Press, New Haven Google Scholar
Margulis L, Walker JCG, Rambler M (1976) A reassessment of the roles of oxygen and ultraviolet light in Precambrian evolution. Nature 284:620–624 Google Scholar
McLaren AD, Shugar D (1964) Photochemistry of proteins and nucleic acids. Pergamon, Oxford Google Scholar
Mildvan A, Loeb L (1979) The role of metal ions in the mechanisms of DNA and RNA polymerases. CRC Crit Rev Biochem 6:219–244 PubMed Google Scholar
Miller SL, Orgel LE (1974) The origins of life on Earth. Prentice-Hall, Englewood Cliffs NJ Google Scholar
Olivera BM (1978) DNA intermediates at the_Escherichia coli_ replication fork: effect of dUTP. Proc Natl Acad Sci USA 75: 238–243 PubMed Google Scholar
Ono J, Wilson RG, Grossman L (1965) Effects of ultraviolet light on the template properties of polycytidylic acid. J Mol Biol 11:600–612 PubMed Google Scholar
Oparin AI (1961) Life: its nature, origin and development. Oliver and Boyd, Edinburgh Google Scholar
Orgel LE (1968) Evolution of the genetic apparatus. J Mol Biol 38:380–393 Google Scholar
Orgel LE, Lohrmann R (1974) Prebiotic chemistry and nucleic acid replication. Acc Chem Res 1:368–377 Google Scholar
Oró J (1965) Stages and mechanisms of prebiological organic synthesis. In: Fox SW (ed) The origin of prebiological systems and their molecular matrices. Academic Press, New York, pp 137–161 Google Scholar
Oró J, Lazcano A (1984) A minimal living system and the origin of a protocell. Adv Space Res 4:167–176 PubMed Google Scholar
Oró J, Lazcano A (1988) A holistic precellular organization model. In: Eirich F, Ponnamperuma C (eds) Prebiological organization. Proceedings of the VIII College Park Colloquium on Chemical Evolution (in press)
Pace N, Marsh T (1985) RNA catalysis and the origin of life. Origins Life 16:97–116 Google Scholar
Pearson M, Johns HE (1966) Suppression of hydrate and dimer formation in ultraviolet-irradiated poly (A+U) relative to poly (U). J Mol Biol 20:215–229 PubMed Google Scholar
Rambler M, Margulis L (1980) Bacterial resistance to UV radiation under anaerobiosis: implications for pre-Phanerozoic evolution. Science 210:638–640 PubMed Google Scholar
Raenney DC (1979) RNA splicing and polynucleotide evolution. Nature 227:597–600 Google Scholar
Reanney DC (1982) The evolution of RNA viruses. Annu Rev Microbiol 36:47–73 PubMed Google Scholar
Remsen JF, Cerutti PA (1972) Ultraviolet inactivation and miscoding of irradiated R17-RNA in vitro. Biochem Biophys Res Commun 48:430–436 PubMed Google Scholar
Rich A (1962) On the problems of evolution and biochemical information transfer. In: Kasha M, Pullman B (eds) Horizons in biochemistry. Academic Press, New York, pp 103–126 Google Scholar
Saenger W (1984) Principles of nucleic acid structure. Springer-Verlag, New York Google Scholar
Schopf JW (ed) (1983) The Earth's earliest biosphere: its origin and evolution. Princeton Academic Press, Princeton NJ Google Scholar
Schopf JW, Packer BM (1987) Early Archean (3.3 billion to 3.5 billion-year-old) microfossils from the Warrawoona group, Australia. Science 237:70–73 PubMed Google Scholar
Schwartz AW (1986) Spontaneous oligomerization of purine derivatives. Abstracts of the Fifth ISSOL (International Society for the Study of the Origin of Life) Meeting, Berkeley CA, July 21–25, 1986, p 155
Schwartz AW (1987) Minimal requirements for molecular information transfer. Adv Space Res 6 (in press)
Schwartz AW, Orgel LE (1986) Template-directed synthesis of novel, nucleic acid-like structures. Science 228:585–587 Google Scholar
Setlow RB (1968) The photochemistry, photobiology and repair of polynucleotides. Prog Nucleic Acid Res Mol Biol 8:257–295 PubMed Google Scholar
Shlomai J, Kornberg A (1978) Deoxyuridine triphosphatase of_Escherichia coli_: purification, properties and use as a reagent to reduce uracil incorporation into DNA. J Biol Chem 253: 3305–3312 PubMed Google Scholar
Shugar D (1960) Photochemistry of nucleic acids and their constituents. In: Chargaff E, Davidson JN (eds) The nucleic acids, vol III. Academic Press, New York, pp 39–104 Google Scholar
Singer B, Kusmierek JT (1982) Chemical mutagenesis. Annu Rev Biochem 52:655–693 Google Scholar
Spirin AS (1986) Ribosome structure and protein biosynthesis. Benjamin Cummings, Menlo Park CA Google Scholar
Sprengel G, Follmann H (1981) Evidence for the reductive pathway of deoxyribonucleotide synthesis in an archaebacterium. FEBS Lett 132:207–209 Google Scholar
Springgate CF, Loeb LA (1975) On the fidelity of transcription by the_Escherichia coli_ ribonucleic acid polymerase. J Mol Biol 97:577–591 PubMed Google Scholar
Steinhauer DA, Holland JJ (1987) Rapid evolution of RNA viruses. Annu Rev Microbiol 41:409–433 PubMed Google Scholar
Tye BK, Chien J, Lehman IR, Duncan BK, Warner HR (1978a) Uracil incorporation: a source of pulse-labeled DNA fragments in the replication of the_Escherichia coli_ chromosome. Proc Natl Acad Sci USA 75:233–239 PubMed Google Scholar
Tye BK, Nyman PO, Lehman IR (1978b) Excision repair of uracil during replication of ϕX 174 DNA in vitro. Biochem Biophys Res Commun 82:434–437 PubMed Google Scholar
Usher DA (1977) Early chemical evolution of nucleic acids. Science 196:311–313 PubMed Google Scholar
Varela F, Maturana HR (1974) Autopoiesis: the organization of living systems, its characterization and a model. Bio-Systems 5:187–196 PubMed Google Scholar
Voet D, Gratzar WB, Cox RA, Doty P (1963) Absorption spectra of nucleotides, polynucleotides and nucleic acids in the far ultraviolet. Biopolymers 1:193–208 Google Scholar
Wacker A, Dellweg D, Trager L, Kornhauser A, Lodemann E, Turck G, Selzer R, Chandra P, Ishimoto M (1964) Organic photochemistry of nucleic acids. Photochem Photobiol 3:369–382 Google Scholar
White DH, Erickson JC (1981) Enhancement of peptide bond formation by polyribonucleotides on clay surfaces in fluctuating environments. J Mol Evol 17:19–26 Google Scholar
White HB (1976) Coenzymes as fossils of an earlier metabolic state. J Mol Evol 7:101–104 PubMed Google Scholar
White HB (1982): Evolution of coenzymes and the origin of pyridine nucleotides. In: Everse J, Anderson B, You KS (eds) The pyridine nucleotide coenzymes. Academic Press, New York, pp 2–17 Google Scholar
Woese CR (1967) The origins of the genetic code. Harper and Row, New York Google Scholar
Zaug, AJ, Cech TR (1985) Oligomerization of intervening sequence RNA molecules in the absence of proteins. Science 229:1060–1064. PubMed Google Scholar
Zaug, AJ, Cech TR (1986) The intervening sequences of_tetrahymena_ is an enzyme. Science 231:470–475. PubMed Google Scholar