Correlation of nonanucleotide motifs with transcript initiation of 18S rRNA genes in mitochondria of pea, potato andArabidopsis (original) (raw)
Abstract
Transcription initiation sites for the mitochondrial 18S rRNA genes in the dicot plants_Arabidopsis thaliana_, potato and pea were identified by a combination of in vitro capping, primer extension and S-1 analyses. These promoters contain a nonanucleotide motif and an AT-rich sequence similar to many mRNA and tRNA promoters in dicot mitochondria. In_Arabidopsis_ and potato, active promoters are located within 120 nucleotides upstream of the 18S rRNA genes, as in_Oenothera_. The nucleotide sequence in the corresponding region in pea mitochondria is well conserved, but is not used as promoter in this plant. Instead a novel promoter sequence is used that lies several hundred nucleotides upstream. These results show that rRNAs can be transcribed from the same promoter types as mRNAs and tRNAs in plant mitochondria. However, the sequence features presently attributed to plant mitochondrial promoters — the conserved nonanucleotide and the upstream AT-rich box — do not allow to deduce the presence of an active promoter from genomic sequence data alone.
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References
- Binder S (1995) Mitochondrial nucleic acid purification and analysis. In: Jones H (ed) Plant gene transfer and expression protocols. Humana Press, Totowa, pp 383–389
Google Scholar - Binder S, Brennicke A (1993) Transcription initiation sites in_Oenothera_ mitochondria. J Biol Chem 268:7849–7855
Google Scholar - Binder S, Grohmann L (1995) Isolation of Mitochondria. In: Jones H (ed) Plant gene transfer and expression protocols. Humana Press, Totowa, pp 377–381
Google Scholar - Binder S, Hatzack F, Brennicke A (1995) A novel pea mitochondrial in vitro transcription system recognizes homologous and heterologous mRNA and tRNA promoters. J Biol Chem 270:22182–22189
Google Scholar - Binder S, Marchfelder A, Brennicke A (1996) Regulation of gene expression in plant mitochondria. Plant Mol Biol, in press
- Chomczynski P, Sacchi N (1987) Single-step method of RNA isolation by guanidiniumthiocyanate-phenol-chloroform extraction. Anal Biochem 162:156–159
Google Scholar - Christianson TW, Clayton DA (1986) In vitro transcription of human mitochondrial DNA: accurate termination requires a region of DNA sequence that can function bidirectionally. Proc Natl Acad Sci USA 83:6277–6281
Google Scholar - Covello PS, Gray MW (1991) Sequence analysis of wheat mitochondrial transcripts capped in vitro: definite identification of transcription initiation sites. Curr Genet 20:245–251
Google Scholar - Falconet D, Lejeune B, Quetier F, Gray MW (1984) Evidence for homologous recombination between repeated sequences containing 18S and 5S ribosomal RNA genes in wheat mitochondrial DNA. EMBO J 3:297–302
Google Scholar - Finnegan PM, Brown GG (1990) Transcriptional and post-transcriptional regulation of RNA levels in maize mitochondria. Plant Cell 2:71–83
Google Scholar - Hanic-Joyce PJ, Gray MW (1991) Accurate transcription of a plant mitochondrial gene in vitro. Mol Cell Biol 11:2035–2039
Google Scholar - Maloney AP, Walbot V (1990) Structural analysis of mature and dicistronic transcripts from the 18S and 5S ribosomal RNA genes of maize mitochondria. J Mol Biol 213:633–649
Google Scholar - Mulligan RM, Leon P, Walbot V (1991) Transcriptional and post-transcriptional regulation of maize mitochondrial gene expression. Mol Cell Biol 11:533–543
Google Scholar - Ohyama K, Fukuzawa K, Kochi T, Shira H, Sano T, Umesono K, Shiki Y, Takeuchi M, Chang Z, Aota S, Inokuchi H, Ozeki H (1986) Chloroplast gene organization deduced from the complete sequence of liverwort_Marchantia polymorpha_ chloroplast DNA. Nature 322:572–574
Google Scholar - Rapp WD, Stern DB (1992) A conserved 11 nucleotide sequence contains an essential promoter element of the maize mitochondrial atp1 gene. EMBO J 11:533–543
Google Scholar - Rapp WD, Lupold DS, Mack S, Stern DB (1993) Architecture of the maize mitochondrial atpl promoter as determined by linkerscanning and point mutagenesis. Mol Cell Biol 13:7232–7238
Google Scholar - Sambrook J, Fritsch EF, Maniatis T (1989) Molecular cloning: a laboratory manual (2nd edn). Cold Spring Habor Laboratory Press, Cold Spring Harbor, New York
Google Scholar - Shinozaki K, Ohme M, Tanaka M, Wakasugi T, Hayashida N, Matsubayashi T, Zaita N, Chunwongse J, Obokata J, Yamaguchi-Shonozaki K, Ohto C, Torazawa K, Meng BY, Sugita M, Deno H, Kamogashira T, Yamada K, Kusuda J, Takaiwa F, Kato A, Tohdoh N, Shimada H, Sugiura M (1986) The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression. EMBO J 5:2043–2049
Google Scholar - Tracy RL, Stern DB (1995) Mitochondrial transcription initiation: promoter structures and RNA polymerases. Curr Genet 28:205–216
Google Scholar
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Authors and Affiliations
- Allgemeine Botanik, Universität Ulm, Albert-Einstein-Allee, D-89069, Ulm
A. Giese, C. Thalheim, A. Brennicke & S. Binder - Institut für Genbiologische Forschung, Ihnestrasse 63, D-14195, Berlin, Germany
A. Giese, C. Thalheim, A. Brennicke & S. Binder
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- A. Giese
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Communicated by R. Hagemann
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Giese, A., Thalheim, C., Brennicke, A. et al. Correlation of nonanucleotide motifs with transcript initiation of 18S rRNA genes in mitochondria of pea, potato and_Arabidopsis_.Molec. Gen. Genet. 252, 429–436 (1996). https://doi.org/10.1007/BF02173008
- Received: 28 March 1996
- Accepted: 09 May 1996
- Issue Date: September 1996
- DOI: https://doi.org/10.1007/BF02173008