A densely methylated DNA Island is associated with a chromosomal replication origin in the humanRPS14 locus (original) (raw)

Literature Cited

1. Tasheva, E.S., and Roufa, D.J. (1994). A mammalian origin of bidirectional DNA replication within the transcribed sequences of the Chinese hamster ribosomal protein S14 locus.Mol. Cell. Biol. 14:5628–5635.
   CAS PubMed Google Scholar
2. Burhans, W.C., Selegue, J.E., and Heintz, N.H. (1986). Isolation of the origin of replication associated with the amplified Chinese hamster dihydrofolate reductase domain.Proc. Natl. Acad. Sci. U.S.A. 83:7790–7794.
   CAS PubMed Google Scholar
3. Burhans, W.C., Vassilev, L.T., Caddle, M.S., Heintz, N.H., and DePamphilis, M.L. (1990). Identification of an origin of bidirectional DNA replication in mammalian chromosomes.Cell 62:955–965.
   Article CAS PubMed Google Scholar
4. Caddle, M.S., Lussier, R.H., and Heintz, N.H. (1990). Intramolecular DNA triplexes, bent DNA and DNA unwinding elements in the initiation region of an amplified dihydrofolate reductase replicon.J. Mol. Biol. 211:19–33.
   Article CAS PubMed Google Scholar
5. DePamphilis, M.L. (1993). Origins of DNA replication in metazoan chromosomes.J. Biol. Chem. 268:1–4.
   CAS PubMed Google Scholar
6. Ma, C., Leu, T.-H., and Hamlin, J.L. (1990). Multiple origins of replication in the dihydrofolate reductase amplicons of a methotrexate-resistant Chinese hamster cell line.Mol. Cell. Biol. 10:1338–1346.
   CAS PubMed Google Scholar
7. Vassilev, L.T., Burhans, W.C., and DePamphilis, M.L. (1990). Mapping an origin of DNA replication at a single-copy locus in exponentially proliferating mammalian cells.Mol. Cell. Biol. 10:4685–4689.
   CAS PubMed Google Scholar
8. Vaughn, J.P., Dijkwel, P.A., and Hamlin, J.L. (1990). Replication initiates in a broad zone in the amplified CHO dihydrofolate reductase domain.Cell 61:1075–1087.
   Article CAS PubMed Google Scholar
9. Tasheva, E.S., and Roufa, D.J. (1994). Densely methylated DNA islands in mammalian chromosomal replication origins.Mol. Cell. Biol. 14:5636–5644.
   CAS PubMed Google Scholar
10. Feil, R., Charlton, J., Bird, A.P., Walter, J., and Reik, W. (1994). Methylation analysis on individual chromosomes: Improved protocol for bisulphite genomic sequencing.Nucleic Acids Res. 22:695–696.
    CAS PubMed Google Scholar
11. Frommer, M., McDonald, L.E., Millar, D.S., Collis, C.M., Watt, F., Grigg, G.W., Molloy, P.L., and Paul, C.L. (1992). A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.Proc. Natl. Acad. Sci. U.S.A. 89:1827–1831.
    CAS PubMed Google Scholar
12. Tasheva, E.S., and Roufa, D.J. (1993). Deoxycytidine methylation and the origin of spontaneous transition mutations in mammalian cells.Somat. Cell Mol. Genet. 19:275–283.
    Article CAS PubMed Google Scholar
13. Church, G.M., and Gilbert, W. (1984). Genomic sequencing.Proc. Natl. Acad. Sci. U.S.A. 81:1991–1995.
    CAS PubMed Google Scholar
14. Rideout, W.M., Coetzee, G.A., Olumi, A.F., and Jones, P.A. (1990). 5-Methylcytosine as an endogenous mutagen in the human LDL receptor and p53 genes.Science 249:1288–1290.
    CAS PubMed Google Scholar
15. Toth, M., Lichtenberg, U., and Doerfler, W. (1989). Genomic sequencing reveals a 5-methylcytosinefree domain in active promoters and the spreading of preimposed methylation patterns.Proc. Natl. Acad. Sci. U.S.A. 86:3728–3732.
    CAS PubMed Google Scholar
16. Toth, M., Muller, U., and Doerfler, W. (1990). Establishment of de novo DNA methylation patterns. Transcription factor binding and deoxycytidine methylation at CpG and non-CpG sequences in an integrated adenovirus promoter.J. Mol. Biol. 214:673–683.
    Article CAS PubMed Google Scholar
17. Rhoads, D.D., Dixit, A., and Roufa, D.J. (1986). Primary structure of human ribosomal protein S14 and the gene that encodes it.Mol. Cell. Biol. 6:2774–2783.
    CAS PubMed Google Scholar
18. Chen, I.-T., and Roufa, D.J. (1988). The transcriptionally active human ribosomal protein S17 gene.Gene 70:107–116.
    CAS PubMed Google Scholar
19. Tasheva, E.S., and Roufa, D.J. (1995). Regulation of human RPS14 transcription by intronic antisense RNAs and ribosomal protein S14.Genes and Dev. 9:304–316.
    CAS PubMed Google Scholar
20. Nakamichi, N., Kao, F.-T., Wasmuth, J.J., and Roufa, D.J. (1986). Ribosomal protein gene sequences map to human chromosomes 5, 8 and 17.Somat. Cell Mol. Genet. 12:225–236.
    Article CAS PubMed Google Scholar
21. Nakamichi, N., Rhoads, D.D., and Roufa, D.J. (1983). The Chinese hamster cell emetine resistance gene: Analysis of cDNA and genomic sequences encoding ribosomal protein S14.J. Biol. Chem. 258:13236–13242.
    CAS PubMed Google Scholar
22. Sanger, F., and Coulson, A.R. (1975). A rapid method for determining sequences in DNA by primed synthesis with DNA polymerase.J. Mol. Biol. 94:441–448.
    Article CAS PubMed Google Scholar
23. Southern, E.M. (1975). Detection of specific sequences among DNA fragments separated by agarose gel electrophoresis.J. Mol. Biol. 98:503–517.
    CAS PubMed Google Scholar
24. Vassilev, L., and Johnson, E.M. (1989). Mapping initiation sites of DNA replication in vivo using polymerase chain reaction amplification of nascent strand segments.Nuc. Acids Res. 17:7693–7705.
    CAS Google Scholar
25. Vassilev, L., and Johnson, E.M. (1990). An initiation zone of chromosomal DNA replication located upstream of the c-myc gene in proliferating HeLa cells.Mol. Cell. Biol. 10:4899–4904.
    CAS PubMed Google Scholar
26. Virta-Pearlman, V.J., Gunaratne, P.H., and Chinault, A.C. (1993). Analysis of a replication initiation sequence from the adenosine deaminase region of the mouse genome.Mol. Cell. Biol. 13:5931–5942.
    CAS PubMed Google Scholar
27. James, C.D., and Leffak, M. (1986). Polarity of DNA replication through the avian alpha-globin locus.Mol. Cell. Biol. 6:976–984.
    CAS PubMed Google Scholar
28. Overman, P.F., Rhoads, D.D., Tasheva, E.S., Pyle, M.M., and Roufa, D.J. (1993). Multiple regulatory elements ensure accurate expression of a human ribosomal protein gene.Somat. Cell Mol. Genet. 19:347–362.
    Article CAS PubMed Google Scholar
29. Friedman, D.L., and Mueller, G.C. (1968). A nuclear system for DNA replication from synchronized hela cells.Biochim. Biophys. Acta 161:455–468.
    CAS PubMed Google Scholar
30. Hershey, H.V., Stieber, J.F., and Mueller, G.C. (1973). DNA synthesis in isolated HeLa nuclei: A system for continuation of replication in vivo.Eur. J. Biochem. 34:383–394.
    Article CAS PubMed Google Scholar
31. Kidwell, W.R., and Mueller, G.C. (1969). The synthesis and assembly of DNA subunits in isolated HeLa cell nuclei.Biochem. Biophys. Res. Commun. 36:756–663.
    Article CAS PubMed Google Scholar
32. Magnusson, G., and Nilsson, M.-G. (1979). Replication of polyoma DNA in isolated nuclei: Analysis of replication fork movement.J. Virol. 32:386–393.
    CAS PubMed Google Scholar
33. Winnacker, E.-L., Magnusson, G., and Reichard, P. (1972). Replication of polyoma DNA in isolated nuclei (i)Characterization of the system from mouse fibroblast 3T6 cells.J. Mol. Biol. 72:523–537.
    Article CAS PubMed Google Scholar
34. Leffak, M., and James, C.D. (1989). Opposite replication polarity of the germ line_c-myc_ gene in HeLa cells compared with that of two Burkitt lymphoma cell lines.Mol. Cell. Biol. 9:586–593.
    CAS PubMed Google Scholar

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