A new obligately chemolithoautotrophic, nitrite-oxidizing bacterium,Nitrospira moscoviensis sp. nov. and its phylogenetic relationship (original) (raw)
Aggag M, Schlegel HG (1973) Studies on a gram-positive hydrogen bacterium,Nocardia opaca Strain 1b. Arch Microbiol 88:299–318 CAS Google Scholar
Bock E (1976) Growth of_Nitrobacter_ in the presence of organic matter. 2. Chemoorganotrophic growth of_Nitrobacter agilis_. Arch Microbiol 108:305–312 ArticlePubMedCAS Google Scholar
Bock E, Heinrich G (1969) Morphologische Untersuchungen an den Zellen von_Nitrobacter winogradskyi Buch_. Arch Mikrobiol 69:149–159 ArticleCAS Google Scholar
Bradford MM (1976) A rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein dye-binding. Anal Biochem 72:248–254 ArticlePubMedCAS Google Scholar
DeLey J (1970) Reexamination of the association between melting point, buoyant density and chemical base composition of desoxyribonucleic acid. J Bacteriol 101:733–754 Google Scholar
Dupuy N, Willems A, Pot B, Dewettinck D, Vandenbruaene, Maestrojuan G, Dreyfus B, Kersters K, Collins MD, Gillis M (1994) Phenotypic and genotypic characterization of bradyrhizobia nodulating the leguminous tree_Acacia albica_. Int J Syst Bacteriol 44:461–473 PubMedCAS Google Scholar
Felsenstein J (1982) Numerical methods for inferring phylogenetic trees. Q Rev Biol 57:379–404 Article Google Scholar
Freitag A, Rudert M, Bock E (1987) Growth of_Nitrobacter_ by dissimilatory nitrate reduction. FEMS Microbiol Lett 48:105–109 ArticleCAS Google Scholar
Garcia-Horsman JA, Barquera B, Rumbley J, Ma J, Gennis RB (1994) The superfamily of heme-copper respiratory oxidases. J Bacteriol 176:5587–5600 PubMedCAS Google Scholar
Henry EA, Devereux R, Make JS, Gilmour CC, Woese CR, Mandelco L, Schauder R, Remsen CC, Mitchell R (1994) Characterization of a new thermophilic sulfate-reducing bacterium:Thermodesulfovibrio yellowstonii, gen. nov. sp. nov.: its phylogenetic relationship to_Thermodesulfobacterium commune_ and their origins deep within the bacterial domain. Arch Microbiol 161:62–69 PubMedCAS Google Scholar
Kalthoff H, Fehr S, Sundermeyer H, Renwrantz L, Bock E (1979) A comparison by means of antisera and lectins of surface structures of_Nitrobacter winogradskyi_ and_N. agilis_. Curr Microbiol 2:375–380 CAS Google Scholar
Koops HP, Harms H (1985) Desoxyribonucleic acid homologies among 96 strains of ammonia-oxidizing bacteria. Arch Microbiol 141:214–218 ArticlePubMedCAS Google Scholar
Lane DJ, Harrison AP, Stahl DA, Pace B, Giovanni SJ, Olsen GJ, Pace NR (1992) Evolutionary relationship among sulfur- and iron-oxidizing bacteria. J Bacteriol 174:269–278 PubMedCAS Google Scholar
Larsen N, Olsen GJ, Maidak BL, McCaughey MJ, Overbeek R, Macke TJ, Marsh TL, Woese CR (1993) The ribosomal database project, Nucleic Acids Res 21:3021–3023 ArticlePubMedCAS Google Scholar
Lemberg R, Barrett J (1973) The cytochromes. Academic Press, New York Google Scholar
Ludwig W, Schleifer KH (1994) Bacterial phylogeny based on 16S and 23S rRNA sequence analyses. FEMS Microbiol Rev 15:155–173 ArticlePubMedCAS Google Scholar
Marmur Y (1961) A procedure for the isolation of desoxyribonucleic acid from microorganisms. J Mol Biol 3:208–218 ArticleCAS Google Scholar
Meincke M, Bock E, Kastrau D, Kroneck PMH (1992) Nitrite oxidoreductase from_Nitrobacter hamburgensis_: redox centers and their catalytic role. Arch Microbiol 158:127–131 Article Google Scholar
Milde K, Bock E (1985) Comparative studies of membrane proteins of_Nitrobacter hamburgensis_ and_Nitrobacter winogradskyi_. FEMS Microbiol Lett 26:135–139 ArticleCAS Google Scholar
Murray RGE, Watson SW (1965) Structure of_Nitrosocystis oceanus_ and comparison with_Nitrosomonas_ and_Nitrobacter_. J Bacteriol 89:1594–1609 PubMedCAS Google Scholar
Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R (1993) Compilation of small ribosomal subunit RNA structures. Nucleic Acids Res 21:3025–3049 ArticlePubMedCAS Google Scholar
Orso S, Gouy M, Navarro E, Normand P (1994) Molecular phylogenetic analysis of_Nitrobacter_ spp. Int J Syst Bacteriol 44:83–86 PubMedCAS Google Scholar
Reynolds ES (1963) The use of lead citrate at high pH as an electron opaque stain in electron microscopy. Cell Biol 18:208–212 Article Google Scholar
Rice CM, Fuchs R, Higgins DG, Stoehr PJ, Cameron GN (1993) The EMBL data library. Nucleic Acids Res 21:2967–2971 ArticlePubMedCAS Google Scholar
Smith AJ, Hoare DS (1968) Acetate assimilation by_Nitrobacter agilis_ in relation to its “obligate autotrophy”. J Bacteriol 95:844–855 PubMedCAS Google Scholar
Spector T (1978) Refinement of the Coomassie blue method of protein quantification. Anal Biochem 86:142–146 ArticlePubMedCAS Google Scholar
Spring S, Amann R, Ludwig W, Schleifer KH, Van Gemerden H, Petersen N (1993) Dominating role of an unusual magnetotactic bacterium in the microaerophilic zone of a freshwater sediment. Appl Environ Microbiol 59:2397–2403 PubMedCAS Google Scholar
Springer N, Ludwig W, Amann R, Schmidt HJ, Görtz HD, Schleifer KH (1993) Occurrence of fragmented 16S rRNA in an obligate bacterial endosymbiont of_Paramecium caudatum_. Proc Natl Acad Sci USA 90:9892–9895 ArticlePubMedCAS Google Scholar
Stackebrandt E, Ludwig W (1994) The importance of using outgroup reference organisms in phylogenetic studies: the_Atopobium_ case. Syst Appl Microbiol 17:39–43 Google Scholar
Steinmüller H, Bock E (1976) Growth of_Nitrobacter_ in the presence of organic matter. 1. Mixotrophic growth. Arch Microbiol 108:299–304 ArticlePubMed Google Scholar
Sundermeyer-Klinger H, Meyer W, Warninghoff B, Bock E (1984) Membrane-bound nitrite oxidoreductase of_Nitrobacter_: evidence for a nitrate reductase system. Arch Microbiol 140:153–158 ArticleCAS Google Scholar
Teske A, Alm E, Regan JM, Toze S, Rittmann BE, Stahl DA (1994) Evolutionary relationship among ammonia- and nitriteoxidizing bacteria. J Bacteriol 176:6623–6630 PubMedCAS Google Scholar
Watson ML (1958) Staining of tissue sections for electron microscopy with heavy metals. Biophys Biochem Cytol 4:475–478 CAS Google Scholar
Watson SW (1971) Taxonomic consideration of the family_Nitrobacteriaceae Buchanan_. Request for opinions. Int J Syst Bacteriol 21:254–270 Article Google Scholar
Watson SW, Waterbury JB (1971) Characteristics of two marine nitrite-oxidizing bacteria,Nitrospina gracilis nov. gen. nov. spec. and_Nitrococcus mobilis_ nov. gen. nov. sp. Arch Mikrobiol 77:203–230 Article Google Scholar
Watson SW, Bock E, Valois FW, Waterbury JB, Schlosser U (1986)Nitrospira marina gen. nov. sp. nov.: a chemolithoau-totrophic nitrite-oxidizing bacterium. Arch Microbiol 144:1–7 Article Google Scholar
Willems A, Collins MD (1992) Evidence for a close genealogical relationship between_Afipia_ (the causal organism of cat scratch disease),Bradyrhizobium japonicum and_Blastobacter denitrificans_. FEMS Microbiol Lett 75:241–246 ArticlePubMedCAS Google Scholar
Wong FYK, Stackebrandt E, Ladha JK, Fleischman DE, Date RA, Fuerst JA (1993) Phylogenetic analysis of_Bradyrhizobium japonicum_ and photosynthetic stem-nodulating bacteria from_Aeschynomene_ species grown in separated geographical regions. Appl Environ Microbiol 60:940–946 Google Scholar
Yamanaka T, Kamita Y, Fukumori Y (1981) Molecular and enzymatic properties of cytochrome_aa_ 3-type terminal oxidase derived from_Nitrobacter agilis_. J Biochem 89:265–273 PubMedCAS Google Scholar
Yanaga M, Yamasoto K (1993) Phylogenetic analysis of the family Rhizobiaceae and related bacteria by sequencing 16S rRNA gene using PCR and DNA sequencer. FEMS Microbiol Lett 107:115–120 Article Google Scholar