A novel actinomycete strain de-replication approach based on the diversity of polyketide synthase and nonribosomal peptide synthetase biosynthetic pathways (original) (raw)
Access this article
Subscribe and save
- Starting from 10 chapters or articles per month
- Access and download chapters and articles from more than 300k books and 2,500 journals
- Cancel anytime View plans
Buy Now
Price excludes VAT (USA)
Tax calculation will be finalised during checkout.
Instant access to the full article PDF.
References
- Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410
Article CAS PubMed Google Scholar - Anderson AS, An Z, Strohl WR (2000) Polyketide antibiotics. In: Lederberg J (ed) Encyclopedia for microbiology, vol 3. Academic, San Diego, pp 241–254
Google Scholar - Anderson AS, Wellington EMH (2001) The taxonomy of Streptomyces and related genera. Int J Syst Evol Microbiol 51:797–814
CAS PubMed Google Scholar - Anderson AS, Clark D, Gibbons P, Sigmund J (2002) The detection of diverse aminoglycoside phosphotransferases within natural populations of actinomycetes. J Ind Microbiol Biotechnol 29:60–69
Article Google Scholar - Ayuso A, Genilloud O (2004) New molecular tools for the screening of NRPS and PKS-I systems in actinomycetes: detection and distribution in major taxonomic groups. Microb Ecol (in press)
- Cook AE, Meyers PR (2003) Rapid identification of filamentous actinomycetes to the genus level using genus-specific 16S rRNA gene restriction fragment patterns. Int J Syst Evol Microbiol 53:1907–1915
Article Google Scholar - Challis GL, Hopwood DA (2003) Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species. Proc Natl Acad Sci USA 100:14555–14561
Article Google Scholar - Chen G, Wang GY, Li X, Waters B, Davies J (2000) Enhanced production of microbial metabolites in the presence of dimethyl sulfoxide. J Antibiot 53:1145–1153
Google Scholar - Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376
CAS PubMed Google Scholar - Hirsch CF, Sigmund JM (1995) Use of polymerase chain reaction (PCR) fingerprinting to differentiate bacteria for microbial products screening. J Indust Microbiol 15:85–93
Google Scholar - Hopwood DA (2003) The Streptomyces genome—be prepared! Nat Biotechnol 21:505–506
Article Google Scholar - Innis MA, Gelfand DH, Sninsky JJ, White TJ (1990) PCR protocols. A guide to methods and applications. Academic, San Diego
Google Scholar - Ishii K, Fukui M (2001) Optimization of annealing temperature to reduce bias caused by a primer mismatch in multitemplate PCR. Appl Environ Microbiol 67:3753–3755
Article Google Scholar - Jensen MA, Webster JA, Straus N (1993) Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms. Appl Environ Microbiol 59:945–952
PubMed Google Scholar - Knight V, Sanglier J-J, DiTullio D, Braccili S, Bonner P, Waters J, Hughes D, Zhang L (2003) Diversifying microbial natural products for drug discovery. Appl Microbiol Biotechnol 62:446–458
Article Google Scholar - MacNeil DJ, Occi JL, Gewain KM, MacNeil T, Gibbons PH, Ruby CL, Danis SJ (1992) Complex organization of the Streptomyces avermitilis genes encoding the avermectin polyketide synthase. Gene 115:119–125
Article Google Scholar - Metsa-Ketela M, Salo V, Halo L, Hautala A, Hakala J, Mantsala P, Ylihonko K (1999) An efficient approach for screening minimal PKS genes from Streptomyces. FEMS Microbiol Lett 180:1–6
Article Google Scholar - Metsa-Ketela M, Halo L, Munukka E, Hakala J, Mantsala P, Ylihonko K (2002) Molecular evolution of aromatic polyketides and comparative sequence analysis of polyketide ketosynthase and 16s ribosomal dna genes from various Streptomyces species. Appl Environ Microbiol 68:4472–4479
Article Google Scholar - Omura S, Ikeda H, Ishikawa J, Hanamoto A, Takahashi C, Shinose M, Takahashi Y, Horikawa H, Nakazawa H, Osonoe T, Kikuchi H, Shiba T, Sakaki Y, Hattori M (2001) Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. Proc Natl Acad Sci USA 98:12215–12220
Article Google Scholar - Peláez F, Genilloud O (2003) Discovering new drugs from microbial natural products. In: Barredo J-L (ed) Microorganisms for health care, food and enzyme production. Research Signpost, Trivandrum, pp 1–23
Google Scholar - Portevin D, Sousa-D’Auria C de, Houssin C, Grimaldi C, Chami M, Daffé M Guilhot C (2004) A polyketide synthase catalyzes the last condensation step of mycolic acid biosynthesis in mycobacteria and related organisms. Proc Natl Acad Sci USA 101:314–319
Article Google Scholar - Ritacco FV, Haltli B, Janson JE, Greenstein M, Bernan VS (2003) Dereplication of Streptomyces soil isolates and detection of specific biosynthetic genes using an automated ribotyping instrument. J Ind Microbiol Biotechnol 30:472–479
Article Google Scholar - Sambrook J, Russel DW (2001) Molecular cloning: a laboratory manual, 3rd edn. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
Google Scholar - Sigmund JM, Clark DJ, Rainey FA, Anderson AS (2003) Detection of eubacterial 3-hydroxy-3-methylglutaryl coenzyme A reductases from natural populations of actinomycetes. Microb Ecol 46:106–112
Article Google Scholar - Sosio M, Bossi E, Bianchi A, Donadio S (2000) Multiple peptide synthase gene clusters in actinomycetes. Mol Gen Genet 264:213–221
Article CAS PubMed Google Scholar - Suay I, Arenal F, Asensio FJ, Basilio A, Cabello MA, Diez MT, Garcia JB, Val AG del, Gorrochategui J, Hernandez P, Pelaez F, Vicente MF(2000) Screening of basidiomycetes for antimicrobial activities. Antonie Van Leeuwenhoek 78:129–139
Article Google Scholar - Suzuki MT, Giovannoni SJ (1996) Bias caused by template annealing in the amplification of mixtures of 16S rRNA genes by PCR. Appl Environ Microbiol 62:625–630
CAS PubMed Google Scholar - Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673–4680
CAS PubMed Google Scholar - Welsh J, McClelland M (1991) Genomic fingerprints produced by PCR with consensus tRNA gene primers. Nucleic Acids Res 19:861–866
Google Scholar - Zazopoulos E, Huang K, Staffa A, Liu W, Bachmann BO, Nonaka K, Ahlert J, Thorson JS, Shen B, Farnet CM (2003) A genomics-guided approach for discovering and expressing cryptic metabolic pathways. Nat Biotechnol 21:187–190
Article Google Scholar