Construction and extensive characterization of a goat Bacterial Artificial Chromosome library with threefold genome coverage (original) (raw)

References

• Andersson L, Archibald A, Ashburner M, Audun S, Barendse W, Bitgood J, Bottema C, Broad T, Brown S, Burt D, Charlier C, Copeland N, Davis S, Davisson M, Edwards J, Eggen A, Elgar G, Eppig JT, Franklin I, Grewe P, Gill T, Graves JAM, Hawken R, Hetzel J, Hilyard A, Jacob H, Jaswinska L, Jenkins N, Kunz H, Levan G, Lie O, Lyons L, Maccarone P, Mellersh C, Montgomery G, Moore S, Moran C, Morizot D, Neff M, Nicholas F, Obrien S, Parsons Y, Peters J, Postlethwait J, Raymond M, Rothschild M, Schook L, Sugimoto Y, Szpirer C, et al. (1996) Comparative genome organization of vertebrates. Mamm Genome 7, 717–734
  Article PubMed CAS Google Scholar
• Barendse W, Vaiman D, Kemp S, Sugimoto Y, Armitage SM, Williams J, Sun S, Eggen A, Agaba M, Aleyasin A, Band M, Bishop M, Buitkamp J, Byrne K, Collins F, Cooper L, Coupettiers W, Denis B, Drinkwater R, Easterday K, Ennis S, Erhardt G, Ferretti L, Gao Q, Georges M, Gurung R, Harlizius B, Hawkins G, Hetzel DJS, Hirano T, Joergensen C, Kessler M, Kirkpatrick B, Konfortov B, Kuhn C, Lenstra H, Leveziel H, Lewin H, Leyhe B, Li L, Martin Burriel I, McGraw RA, Miller JR, Moody D, Moore S, Nakane S, Nijman I, Olsaker I, Pomp D, Rando A, Ron M, Shalom A, Soller M, Teale A, Thieven U, Vage D, Varvio S, Velmala RVJ, Weikard R, Woodside C, Womack J, Zanotti M, Zaragoza P (1997) A medium-density genetic linkage map of the bovine genome. Mamm Genome 8, 21–28
  Article PubMed CAS Google Scholar
• Beckmann JS, Weber, JL (1992) Survey of human and rat microsatellites. Genomics 12, 627–631
  Article CAS Google Scholar
• Bellané-Chantelot C, Lacroix B, Ougen P, Billault A, Beaufils S, Bertrand S, Georges I, Gilbert F, Gros I, Lucotte G, Susini L, Codani J-J, Gesnouin P, Pook S, Vayssex G, Lu-Kuo J, Ried T, Ward D, Chumakov I, Le Paslier D, Barillot E, Cohen D (1992) Mapping the whole human genome by fingerprinting yeast artificial chromosomes. Cell 70, 1059–1068
  Article Google Scholar
• Broom MF, Hill DF (1994) Construction of a large-insert yeast-artificial chromosome library from sheep DNA. Mamm Genome 5, 817–819
  Article PubMed CAS Google Scholar
• Cai L, Taylor JF, Wing RA, Gallagher DS, Woo S-S, Davis SK (1995) Construction and characterization of a bovine bacterial artificial chromosome library. Genomics 29, 413–425
  Article PubMed CAS Google Scholar
• Cai L, Schalkwyk LC, Schoeberlein-Stehli A, Zee RYL, Smith A, Haaf T, Georges M, Lehrach H, Lindpaintner K (1997) Construction and characterization of a 10-genome equivalent yeast artificial chromosome library for the laboratory rat Rattus norvegicus. Genomics 39, 385–392
  Article PubMed CAS Google Scholar
• Chowdhary BP, Frönicke L, Gustavsson I, Scherthan H (1996) Comparative analysis of cattle and human genomes: detection of ZOO-FISH and gene mapping-based chromosomal homologies. Mamm Genome 7, 297–302
  Article PubMed CAS Google Scholar
• Crawford AM, Dodds KG, Pierson CA, Ede AJ, Montgomery GW, Garmonsway HG, Beattie AE, Davies K, Maddox JF, Kappes SW, Stone RT, Nguyen TC, Penty JM, Lord EA, Broom JE, Buitkamp J, Schwenger W, Epplen JT, Matthew P, Matthews ME, Hulme DJ, Beh KJ, McGraw RA, Beattie CW (1995) An autosomal genetic linkage map of the sheep genome. Genetics 140, 703–724
  PubMed CAS Google Scholar
• Cribiu EP, Matejka M, Denis B, Malher X (1988) Etude chromosomique d’un hybride chèvre x mouton fertile. Genet Sel Evol 20, 379–386
  Article Google Scholar
• Georges M, Drinkwater R, King T, Mishra A, Moore SS, Nielsen D, Sargeant LS, Sorensen A, Steele MR, Zhao X, Womack JE, Hetzel J (1993) Microsatellite mapping of a gene affecting horn development in Bos taurus. Nature Genet 4, 206–210
  Article PubMed CAS Google Scholar
• Goureau A, Yerle M, Schmitz A, Riquet J, Milan D, Pinton P, Frelat G, Gellin J (1996) Human and porcine correspondence of chromosome segments using bidirectional chromosome painting. Genomics 36, 252–262
  Article PubMed CAS Google Scholar
• Guillemot E, Gary F, Berland HM, Durand V, Darré R, Cribiu EP (1991) Cytogenetic investigation in Saanen and Alpine artificial insemination bucks. Identification of a Robertsonian translocation. Genet Sel Evol 23, 449–154
  Article Google Scholar
• Gyapay G, Schmitt K, Fizames C, Jones H, Vega-Czarny N, Spillett D, Muselet D, Prud’Homme J-F, Dib C, Auffray C, Morissette J, Weissenbach J, Goodfellow PN (1996) A radiation hybrid map of the human genome. Hum Mol Genet 5, 339–346
  Article PubMed CAS Google Scholar
• Hanahan D (1983) Studies on transformation of Escherichia coli with plasmids. J Mol Biol 166, 557–580
  Article PubMed CAS Google Scholar
• Hayes H (1995) Chromosome painting with human chromosome specific DNA libraries reveals the extent and the distribution of conserved segments in bovine chromosomes. Cytogenet Cell Genet 71, 168–174
  Article PubMed CAS Google Scholar
• Kim UJ, Birren BW, Slepak T, Mancino V, Boysen C, Kang HL, Simon MI, Shizuya H (1996) Construction and characterization of a human bacterial artificial chromosome library. Genomics 34, 213–218
  Article PubMed CAS Google Scholar
• Klein R, Wolf ED, Wu R, Sanford JC (1992) High-velocity microprojectiles for delivering nucleic acids into living cells. Biotechnology 24, 384–386
  PubMed CAS Google Scholar
• Kondo Y, Mori M, Kuramoto T, Yamada J, Beckmann JS, Simon-Chazottes D, Montagutelli X, Guénet J-L, Serikawa T (1993) DNA segments mapped by reciprocal use of microsatellite primers between mouse and rat. Mamm Genome 4, 571–576
  Article PubMed CAS Google Scholar
• Larsen F, Gundersen G, Lopez R, Prydz H (1992) CpG islands as gene markers in the human genome. Genomics 13, 1095–1107
  Article PubMed CAS Google Scholar
• Le Provost F, Lepingle A, Martin P (1996) A survey of the goat genome transcribed in the lactating mammary gland. Mamm Genome 7, 657–666
  Article PubMed Google Scholar
• Libert F, Lefort A, Okimoto R, Womack J, Georges M (1993) Construction of a bovine genomic library of large yeast artificial chromosome clones. Genomics 270–276.
• Lindsay S, Bird AP (1987) Use of restriction enzymes to detect potential gene in mammalian DNA. Nature 327, 336–338
  Article PubMed CAS Google Scholar
• Lyons LA, Laughlin TF, Copeland NG, Jenkins NA, Womack JE, O’Brien SJ (1997) Comparative anchor tagged sequences (CATS) for integrative mapping of mammalian genomes. Nature Genet 15, 47–56
  Article PubMed CAS Google Scholar
• Moore SS, Sargeant LL, King TJ, Mattick JS, Georges M, Hetzel DJS (1991) The conservation of dinucleotide microsatellites among mammalian genomes allows the use of heterologous PCR primer pairs in closely related species. Genomics 10, 654–660
  Article PubMed CAS Google Scholar
• Moore SS, Byrne K, Berger KT, Barendse W, McCarthy F, Womack JE, Hetzel DJS (1994) Characterization of 65 bovine microsatellites. Mamm Genome 5, 84–90
  Article PubMed CAS Google Scholar
• O’Brien SJ, Womack JE, Lyons LA, Moore KJ, Jenkins NA, Copeland NG (1993) Anchored reference loci for comparative genome mapping in mammals. Nature Genetics 3, 103–112
  Article PubMed Google Scholar
• Pépin L, Amigues Y, Lépingle A, Berthier J-L, Bensaïd A, Vaiman D (1995) Sequence conservation of microsatellites between cattle (Bos taurus) and goat (Capra hircus), and related species. Examples of use in parentage testing and phylogeny analysis. Heredity 74, 53–61
  Article PubMed Google Scholar
• Rogel-Gaillard C, Bourgeaux N, Save J-C, Renard C, Coullin P, Pinton P, Yerle M, Vaiman M, Chardon P (1997) Construction of a swine YAC library allowing an efficient recovery of unique and centromeric repeated sequences. Mamm Genome 8, 186–192
  Article PubMed CAS Google Scholar
• Schlötterer C, Tautz D (1992) Slippage synthesis of simple sequence DNA. Nucl Acids Res 20, 211–215
  Article PubMed Google Scholar
• Shizuya H, Birren B, Kim U-J, Mancino V, Slepak T, Tachiri Y, Simon M (1992) Cloning and stable expression of 300-kilobase-pair fragments of human DNA in Escherischia coli using an F-factor-based vector. Proc Natl Acad Sci USA 89, 8794–8797
  Article PubMed CAS Google Scholar
• Smith TPL, Alexander LJ, Sonstegard TS, Yoo J, Beattie CW, Broom MF (1996) Construction and characterization of a large insert bovine YAC library with five-fold genomic coverage. Mamm Genome 7, 155–156
  Article PubMed CAS Google Scholar
• Solinas-Toldo S, Lengauer C, Fries R (1995) Comparative genome map of human and cattle. Genomics 27, 489–496
  Article PubMed CAS Google Scholar
• Steffen PJ (1992) Systematische Suche nach hochpolymorphen Markerloci im Rindergenom Zürich.
• Stevanovic M, Zuffardi O, Collignon J, Lovell-Badge R, Goodfellow P (1994) The cDNA sequence and chromosomal location of the human SOX2 gene. Mamm Genome 5, 640–642
  Article PubMed CAS Google Scholar
• Stubbs L, Carver EA, Shannon ME, Kim J, Geisler J, Generoso EE, Stanford BG, Dunn WC, Mohrenweiser H, Zimmermann W, Watt SM, Ashworth LK (1996) Detailed comparative map of human chromosome 19q and related regions of the mouse genome. Genomics 35, 499–508
  Article PubMed CAS Google Scholar
• Sun HS, Cai L, Davis SK, Taylor JF, Doud LK, Bishop MD, Hayes H, Barendse W, Vaiman D, McGraw RA, Hirano T, Sugimoto Y, Kirkpatrick BW (1997) Comparative linkage mapping of human chromosome 13 and bovine chromosome 12. Genomics 39, 47–54
  Article PubMed CAS Google Scholar
• Vaiman D, Koutita O, Oustry A, Elsen J-M, Manfredi E, Fellous M, Cribiu EP (1996a) Genetic mapping of the autosomal region involved in XX sex-reversal and horn development in goats. Mamm Genome 7, 133–137
  Article PubMed CAS Google Scholar
• Vaiman D, Mercier D, Moazami-Goudarzi K, Eggen A, Ciampolini R, Lépingle A, Velmala R, Kaukinen J, Varvio S-L, Martin P, Levéziel H, Guérin G (1994) A set of 99 cattle microsatellites: characterization, synteny mapping and polymorphism. Mamm Genome 5, 288–297
  Article PubMed CAS Google Scholar
• Vaiman D, Pailhoux E, Schibler L, Oustry A, Chaffaux S, Cotinot C, Fellous M, Cribiu EP (1997) Genetic mapping of the polled/intersex locus (PIS) in goats. Theriogenology 47, 103–109
  Article CAS Google Scholar
• Vaiman D, Schibler L, Bourgeois F, Oustry A, Amigues Y, Cribiu EP (1996b) A genetic linkage map of the male goat genome. Genetics 144, 279–305
  PubMed CAS Google Scholar
• Wang GL, Holsten TE, Song WY, Wang HP, Ronald PC (1995) Construction of a rice bacterial artificial chromosome library and identification of clones linked to the Xa-21 disease resistance locus. Plant J 7, 525–533
  Article PubMed CAS Google Scholar
• Woo S-S, Jiang J, Gill BS, Paterson AH, Wing RA (1994) Construction and characterization of a bacterial artificial chromosome library of Sorghum bicolor. Nucl Acids Res 22, 4922–4931
  Article PubMed CAS Google Scholar

Download references