Sequences and gene organization of the mitochondrial genomes of the liver flukes Opisthorchis viverrini and Clonorchis sinensis (Trematoda) (original) (raw)
Blair D, Le TH, Després L, McManus DP (1999) Mitochondrial genes of Schistosoma mansoni. Parasitology 119:303–313 ArticlePubMedCAS Google Scholar
Boonjaraspinyo S, Boonmars T, Aromdee C, Kaewsamut B (2010) Effect of fingerroot on reducing inflammatory cells in hamster infected with Opisthorchis viverrini and _N_-nitrosodimethylamine administration. Parasitol Res 106:1485–1489 ArticlePubMed Google Scholar
Cai XQ, Xu MJ, Wang YH, Qiu DY, Liu GX, Lin A, Tang JD, Zhang RL, Zhu XQ (2010) Sensitive and rapid detection of Clonorchis sinensis infection in fish by loop-mediated isothermal amplification (LAMP). Parasitol Res 106:1379–1383 ArticlePubMedCAS Google Scholar
Catanese G, Manchado M, Infante C (2010) Evolutionary relatedness of mackerels of the Catanese genus Scomber based on complete mitochondrial genomes: strong support to the recognition of Atlantic Scomber colias and Pacific Scomber japonicus as distinct species. Gene 452:35–43 ArticlePubMedCAS Google Scholar
Chen HX, Sundberg P, Norenburg JL, Sun SC (2009) The complete mitochondrial genome of Cephalothrix simula (Iwata) (Nemertea: Palaeonemertea). Gene 442:8–17 ArticlePubMedCAS Google Scholar
Chen J, Xu H, Zhang Z, Zeng S, Gan W, Yu X, Hu X (2011) Cloning and expression of 21.1-kDa tegumental protein of Clonorchis sinensis and human antibody response to it as a trematode-nematode pan-specific serodiagnosis antigen. Parasitol Res 108:161–168 ArticlePubMed Google Scholar
Elise MK, Tarig H, Thomas R (1998) The mitochondrial genome of Onchocerca volvulus: sequence, structure and phylogenetic analysis. Mol Biochem Parasitol 95:111–127 Article Google Scholar
Guindon S, Gascuel O (2003) A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst Biol 52:696–704 ArticlePubMed Google Scholar
Hu M, Chilton NB, Gasser RB (2002) The mitochondrial genomes of the human hookworms, Ancylostoma duodenale and Necator americanus (Nematoda: Secernentea). Int J Parasitol 32:145–158 ArticlePubMedCAS Google Scholar
Hu M, Chilton NB, Gasser RB (2003) The mitochondrial genome of Strongyloides stercoralis (Nematoda) idiosyncratic gene order and evolutionary implications. Int J Parasitol 33:1393–1408 ArticlePubMedCAS Google Scholar
Kang S, Sultana T, Loktev VB, Wongratanacheewin S, Sohn WM, Eom KS, Park JK (2008) Molecular identification and phylogenetic analysis of nuclear rDNA sequences among three opisthorchid liver fluke species (Opisthorchiidae: Trematoda). Parasitol Int 57:191–197 ArticlePubMedCAS Google Scholar
Keddie EM, Higazi T, Unnasch TR (1998) The mitochondrial genome of Onchocerca volvulus: sequence, structure and phylogenetic analysis. Mol Biochem Parasitol 95:111–127 ArticlePubMedCAS Google Scholar
Kiatsopit N, Sithithaworn P, Sithithaworn J, Boonmars T, Tesana S, Pitaksakulrat O, Saijuntha W, Petney TN, Andrews RH (2011) Genetic relationships within the Opisthorchis viverrini species complex with specific analysis of O. viverrini from Savannakhet, Lao PDR by multilocus enzyme electrophoresis. Parasitol Res 108:211–217 ArticlePubMed Google Scholar
Kim KH, Eoma KS, Park JK (2006) The complete mitochondrial genome of Anisakis simplex (Ascaridida: Nematoda) and phylogenetic implications. Int J Parasitol 36:319–328 ArticlePubMedCAS Google Scholar
Le TH, Blair D, McManus DP (2000) Mitochondrial DNA sequences of human schistosomes: the current status. Int J Parasitol 30:283–290 ArticlePubMedCAS Google Scholar
Le TH, Humair PF, Blair D, Agatsuma T, Littlewood DT, McManus DP (2001a) Mitochondrial gene content, arrangement and composition compared in African and Asian schistosomes. Mol Biochem Parasitol 117:61–71 ArticlePubMedCAS Google Scholar
Le TH, Blair D, McManus DP (2001b) Complete DNA sequence and gene organization of the mitochondrial genome of the liver fluke, Fasciola hepatica L. (Platyhelminthes; Trematoda). Parasitology 123:609–621 ArticlePubMedCAS Google Scholar
Li MW, Lin RQ, Song HQ, Wu XY, Zhu XQ (2008) The complete mitochondrial genomes for three Toxocara species of human and animal health significance. BMC Genomics 9:224 ArticlePubMed Google Scholar
Littlewood DT, Lockyer AE, Webster BL, Johnston DA, Le TH (2006) The complete mitochondrial genomes of Schistosoma haematobium and Schistosoma spindale and the evolutionary history of mitochondrial genome changes among parasitic flatworms. Mol Phylogenet Evol 39:452–467 ArticlePubMedCAS Google Scholar
Liu GH, Lin RQ, Li MW, Liu W, Liu Y, Yuan ZG, Song HQ, Zhao GH, Zhang KX, Zhu XQ (2011) The complete mitochondrial genomes of three cestode species of Taenia infecting animals and humans. Mol Biol Rep 38:2249–2256 ArticlePubMedCAS Google Scholar
Lowe TM, Eddy SR (1997) tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 25:955–964 ArticlePubMedCAS Google Scholar
Lun ZR, Gasser RB, Lai DH, Li AX, Zhu XQ, Yu XB, Fang YY (2005) Clonorchiasis: a key foodborne zoonosis in China. Lancet Infect Dis 5:31–41 ArticlePubMed Google Scholar
Marcos LA, Terashima A, Gotuzzo E (2008) Update on hepatobiliary flukes: fascioliasis, opisthorchiasis and clonorchiasis. Curr Opin Infect Dis 21:523–530 ArticlePubMed Google Scholar
Nakao M, Abmed D, Yamasaki H, Ito A (2007) Mitochondrial genomes of the human broad tapeworms Diphyllobothrium latum and Diphyllobothrium nihonkaiense (Cestoda: Diphyllobothriidae). Parasitol Res 101:233–236 ArticlePubMed Google Scholar
Olson PD, Cribb TH, Tkach VV, Bray RA, Littlewood DT (2003) Phylogeny and classification of the Digenea (Platyhelminthes: Trematoda). Int J Parasitol 33:733–755 ArticlePubMedCAS Google Scholar
Pak JH, Moon JH, Hwang SJ, Cho SH, Seo SB, Kim TS (2009) Proteomic analysis of differentially expressed proteins in human cholangiocarcinoma cells treated with Clonorchis sinensis excretory-secretory products. J Cell Biochem 108:1376–1388 ArticlePubMedCAS Google Scholar
Park GM (2007) Genetic comparison of liver flukes, Clonorchis sinensis and Opisthorchis viverrini, based on rDNA and mtDNA gene sequences. Parasitol Res 100:351–357 ArticlePubMed Google Scholar
Posada D, Crandall KA (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14:817–818 ArticlePubMedCAS Google Scholar
Ronquist F, Huelsenbeck JP (2003) MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19:1572–1574 ArticlePubMedCAS Google Scholar
Shekhovtsov SV, Katokhin AV, Romanov KV, Besprozvannykh VV, Fedorov KP, Yurlova NI, Serbina EA, Sithithaworn P, Kolchanov NA, Mordvinov VA (2009) A novel nuclear marker, Pm-int9, for phylogenetic studies of Opisthorchis felineus, Opisthorchis viverrini, and Clonorchis sinensis (Opisthorchiidae, Trematoda). Parasitol Res 106:293–297 ArticlePubMed Google Scholar
Shekhovtsov SV, Katokhin AV, Kolchanov NA, Mordvinov VA (2010) The complete mitochondrial genomes of the liver flukes Opisthorchis felineus and Clonorchis sinensis (Trematoda). Parasitol Int 59:100–103 ArticlePubMedCAS Google Scholar
Sithithaworn P, Haswell-Elkins M (2003) Epidemiology of Opisthorchis viverrini. Acta Trop 88:187–194 ArticlePubMed Google Scholar
Soukhathammavong P, Odermatt P, Sayasone S, Vonghachack Y, Vounatsou P, Hatz C, Akkhavong K, Keiser J (2011) Efficacy and safety of mefloquine, artesunate, mefloquine-artesunate, tribendimidine, and praziquantel in patients with Opisthorchis viverrini: a randomised, exploratory, open-label, phase 2 trial. Lancet Infect Dis 11:110–118 ArticlePubMedCAS Google Scholar
Sri-Aroon P, Intapan PM, Lohachit C, Phongsasakulchoti P, Thanchomnang T, Lulitanond V, Hiscox A, Phompida S, Sananikhom P, Maleewong W, Brey PT (2011) Molecular evidence of Opisthorchis viverrini in infected bithyniid snails in the Lao People’s Democratic Republic by specific hybridization probe-based real-time fluorescence resonance energy transfer PCR method. Parasitol Res 108:973–978 ArticlePubMed Google Scholar
Swofford DL (2002) Paup*: phylogenetic analysis using parsimony, version 4.0b10. Sinauer Associates, Sunderland Google Scholar
Talavera G, Castresana J (2007) Improvement of phylogenies after removing divergent and ambiguously aligned blocks from protein sequence alignments. Syst Biol 56:564–577 ArticlePubMedCAS Google Scholar
Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol Biol Evol 24:1596–1599 ArticlePubMedCAS Google Scholar
Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25:4876–4882 ArticlePubMedCAS Google Scholar
Webster BL, Rudolfová J, Horák P, Littlewood DT (2007) The complete mitochondrial genome of the bird schistosome Trichobilharzia regenti (Platyhelminthes: Digenea), causative agent of cercarial dermatitis. J Parasitol 93:553–561 ArticlePubMedCAS Google Scholar
Wolstenholme DR (1992) Animal mitochondrial DNA, structure and evolution. Int Rev Cytol 141:173–216 ArticlePubMedCAS Google Scholar
Zhao GH, Mo XH, Zou FC, Li J, Weng YB, Lin RQ, Xia CM, Zhu XQ (2009) Genetic variability among Schistosoma japonicum isolates from different endemic regions in China revealed by sequences of three mitochondrial DNA genes. Vet Parasitol 162:67–74 ArticlePubMedCAS Google Scholar