First next-generation sequencing data for Haploporidae (Digenea: Haploporata): characterization of complete mitochondrial genome and ribosomal operon for Parasaccocoelium mugili Zhukov, 1971 (original) (raw)
Biswal DK, Chatterjee A, Bhattacharya A, Tandon V (2014) The mitochondrial genome of Paragonimus westermani (Kerbert, 1878), the Indian isolate of the lung fluke representative of the family Paragonimidae (Trematoda). PeerJ 2:e484. https://doi.org/10.7717/peerj.484 ArticlePubMedPubMed Central Google Scholar
Chang Q-C, Liu G-H, Gao J-F, Zheng X, Zhang Y, Duan H, Yue D-M, Fu X, Su X, Gao Y, Wang C-R (2016) Sequencing and characterization of the complete mitochondrial genome from the pancreatic fluke Eurytrema pancreaticum (Trematoda, Dicroroeliidae). Gene 576:160–165. https://doi.org/10.1016/j.gene.2015.09.081 ArticleCASPubMed Google Scholar
Le TH, Blair D, Agatsuma T, Humair PF, Campbell NJ, Iwagami M, Littlewood DT, Peacock B, Johnston DA, Bartley J, Rollinson D, Herniou EA, Zarlenga DS, McManus DP (2000) Phylogenies inferred from mitochondrial gene orders–a cautionary tale from the parasitic flatworms. Mol Biol Evol 17:1123–1125. https://doi.org/10.1093/oxfordjournals.molbev.a026393 ArticleCASPubMed Google Scholar
Le TH, Nguyen NTB, Nguyen KT, Doan HTT, Dung DT, Blair D (2016) A complete mitochondrial genome from Echinochasmus japonicus supports the elevation of Echinochasminae Odhner, 1910 to family rank (Trematoda: Platyhelminthes). Infect Genet Evol 45:369–377. https://doi.org/10.1016/j.meegid.2016.09.024 ArticleCASPubMed Google Scholar
Le TH, Nguyen KT, Nguyen NTB, Doan HTT, Agatsuma T, Blair D (2019) The complete mitochondrial genome of Paragonimus ohirai (Paragonimidae: Trematoda: Platyhelminthes) and its comparison with P. westermani congeners and other trematodes. PeerJ 7:e7031. https://doi.org/10.7717/peerj.7031
Li Y, Ma XX, Lv QB, Hu Y, Qiu HY, Chang QC, Wang CR (2019) Characterization of the complete mitochondrial genome sequence of Tracheophilus cymbius (Digenea), the first representative from the family Cyclocoeliidae. J Helminthol 94(e101):1–7. https://doi.org/10.1017/S0022149X19000932 Article Google Scholar
Littlewood DTJ, Lockyer AE, Webster BL, Johnston DA, Le TH (2006) The complete mitochondrial genomes of Shistosoma haematobium and Shistosoma spindale and the evolutionary history of mitochondrial genome changes among parasitic flatworms. Mol Phylogenet Evol 39:452–467. https://doi.org/10.1016/j.ympev.2005.12.012 ArticleCASPubMed Google Scholar
Liu G-H, Yan H-B, Otranto D, Wang X-Y, Zhao G-H, Jia W-Z, Zhu X-Q (2014a) Dicrocoelium chiensis and Dicrocoelium dendriticum (Trematoda: Digenea) are distinct lancet fluke species based on mitochonsrial and nuclear ribosomal DNA sequences. Mol Phylogenet Evol 97:325–331. https://doi.org/10.1016/j.ympev.2014.07.002 Article Google Scholar
Ma J, He J-J, Zhou C-Y, Sun M-M, Cevallos W, Sugiyama H, Zhu X-Q, Calvopina M (2019) Characterization of the mitochondrial genome sequences of the liver fluke Amphimerus sp. (Trematoda: Opisthorchiidae) from Ecuador and phylogenetic implications. Acta Trop 195:90–96. https://doi.org/10.1016/j.actatropica.2019.04.025 ArticleCASPubMed Google Scholar
Na L, Gao J-F, Liu G-H, Fu X, Su X, Yue D-M, Gao Y, Zhang Y, Wang C-R (2016) The complete mitochondrial genome of Metorchis orientalis (Trematoda: Opisthorchiidae): comparison with other closely related species and phylogenetic implications. Infect Genet Evol 39:45–50. https://doi.org/10.1016/j.meegid.2016.01.010 ArticleCASPubMed Google Scholar
Nurk S, Bankevich A, Antipov D, Gurevich A, Korobeynikov A, Lapidus A, Prjibelsky A, Pyshkin A, Sirotkin A, Sirotkin Y, Stepanauskas R, McLean J, Lasken R, Clingenpeel S, Woyke T, Tesler G, Alekseyev M, Pevzner P (2013) Assembling genomes and mini-metagenomes from highly chimeric reads. Lect Notes Comput Sci 7821:158–170. https://doi.org/10.1007/978-3-642-37195-0 Article Google Scholar
Oey H, Zakrzewski M, Gravermann K, Young ND, Korhonen PK, Gobert GN, Nawaratna S, Hasan S, Martínez DM, You H, Lavin M, Jones MK, Ragan MA, Stoye J, Oleaga A, Emery AM, Webster BL, Rollinson D, Gasser RB, McManus DP, Krause L (2019) Whole-genome sequence of the bovine blood fluke Shistosoma bovis supports interspecific hybridization with S. haematobium. PLoS Pathog 15:e1007513. https://doi.org/10.1371/journal.ppat.1007513
Park J-K, Kin K-H, Kang S, Jeon HK, Kin J-H, Littlewood DTJ (2007) Characterization of the mitochondrial genome of Diphyllobothrium latum (Cestoda: Pseudophyllidea)–implications for the phylogeny of eucestodes. Parasitology 134:749–759. https://doi.org/10.1017/S003118200600206X ArticleCASPubMed Google Scholar
Pérez-Ponce de León G, Hernández-Mena DI (2019) Testing the higher-level phylogenetic classification of Digenea (Platyhelminthes, Trematoda) based on nuclear rDNA sequences before entering the age of the ‘next-generation’ Tree of Life. J Helminthol 93:260–276. https://doi.org/10.1017/S0022149X19000191 ArticleCASPubMed Google Scholar
Semyenova S, Chrisanfova G, Mozharovskaya L, Guliaev A, Ryskov A (2017) The complete mitochondrial genome of the causative agent of the human cercarial dermatitis, the visceral bird shistosome species Trichobilharzia szidati (Platyhelminthes: Trematoda: Shistosomatidae). Mit DNA Part B 2(2):469–470. https://doi.org/10.1080/23802359.2017.1347833 Article Google Scholar
Suleman S, Khan MS, Heneberg P, Zhou CY, Muhammad N, Zhu X-Q, Ma J (2019a) Characterization of the complete mitochondrial genome of Uvitellina sp., representative of the family Cyclocoeliidae and phylogenetic implications. Parasitol Res 118:2203–2211. https://doi.org/10.1007/s00436-017-5669-6 ArticleCASPubMed Google Scholar
Suleman S, Ma J, Khan MS, Tkach VV, Muhammad N, Zhang D, Zhu X-Q (2019b) Characterization of the complete mitochondrial genome of Plagiorchis maculosus (Digenea, Plagiorchiidae), representative of a taxonomically complex digenean family. Parasitol Int 71:99–105. https://doi.org/10.1016/j.parint.2019.04.001 ArticleCASPubMed Google Scholar
TIBCO Software Inc. (2017). Statistica (program product for data analysis), version 13. http://statistica.io.
Webster BL, Rudilfová J, Horák P, Littlewood DTJ (2007) The complete mitochondrial genome of the bird shistosome Trichobilharzia regent (Platyhelminthes: Digenea), causative agent of cercarial dermatitis. J Parasitol 93:553–561. https://doi.org/10.1645/GE-1072R.1 ArticleCASPubMed Google Scholar
Wu Y-A, Gao J-W, Cheng X-F, Xie M, Yuan X-P, Liu D, Song R (2020) Characterization and comparative analysis of the complete mitochondrial genome of Azygia hwangtsiyui Tsin, 1933 (Digenea), the first for a member of the family Azygiidae. ZooKeys 945:1–16. https://doi.org/10.3897/zookeys.945.49681 ArticlePubMedPubMed Central Google Scholar
Yang X, Wang L, Chen H, Feng H, Shen B, Hu M, Fang R (2016) The complete mitochondrial genome of Gastrothylax crumenifer (Gastrothylacidae, Trematoda) and comparative analyses with selected trematodes. Parasitol Res 115:2489–2497. https://doi.org/10.1007/s00436-016-5019-0
Zhukov EV (1971) New trematodes of marine and freshwater fishes from the basins of the Japanese and Yellow seas. Parazitologiya 5:155–161 (In Russian).