Full-length sequencing and genomic characterization of Bagaza, Kedougou, and Zika viruses (original) (raw)
DE Alvarez MF Lodeiro SJ Luduena LI Pietrasanta AV Gamarnik (2005)ArticleTitleLong-range RNA-RNA interactions circularize the dengue virus genome_J Virol_ 79 6631–6643Occurrence Handle15890901Occurrence Handle10.1128/JVI.79.11.6631-6643.2005Occurrence Handle1:CAS:528:DC%2BD2MXksFKhtbY%3D ArticlePubMedCAS Google Scholar
BJ Barnard SB Buy JH Du Preez SP Greyling HJ Venter (1950)ArticleTitleTurkey meningo encephalitis in South Africa_Onderstepoort J Vet Res_ 47 89–94 Google Scholar
CH Calisher K Karabatsos JM Dalrymple RE Shope JS Porterfield EG Westaway WE Brandt (1989)ArticleTitleAntigenic relationship between flaviviruses as determined by cross-neutralization tests with polyclonal antisera_J Gen Virol_ 70 37–43Occurrence Handle2543738 PubMed Google Scholar
TJ Chambers CS Hahn R Galler CM Rice (1990)ArticleTitleFlavivirus genome organization, expression, and replication_Annu Rev Microbiol_ 44 649–688Occurrence Handle2174669Occurrence Handle10.1146/annurev.mi.44.100190.003245Occurrence Handle1:CAS:528:DyaK3MXjs1KnsQ%3D%3D ArticlePubMedCAS Google Scholar
G-JJ Chang (1997) Molecular biology of dengue viruses DJ Gubler G Kuno (Eds) Dengue and dengue hemorrhagic fever CAB International Wallingford, UK 175–198 Google Scholar
G-JJ Chang AR Hunt B Davis (2000)ArticleTitleA single intramuscular injection of recombinant plasmid DNA induces protective immunity and prevents Japanese encephalitis in mice_J Virol_ 74 4244–4252Occurrence Handle10756038Occurrence Handle10.1128/JVI.74.9.4244-4252.2000Occurrence Handle1:CAS:528:DC%2BD3cXislGru7g%3D ArticlePubMedCAS Google Scholar
Felsenstein J (1995) PHYLIP, version 3.57c. Department of Genetics, University of Washington, Seattle, WA
JL Fu BH Tan EH Yap YC Chan YH Tan (1992)ArticleTitleFull-length cDNA sequence of Dengue type 1 virus (Singapore strain S275/90)Virology188 953–958Occurrence Handle1585663Occurrence Handle10.1016/0042-6822(92)90560-COccurrence Handle1:CAS:528:DyaK3sXit1Ohur4%3D ArticlePubMedCAS Google Scholar
CS Hahn YS Hahn CM Rice E Lee L Dalgarno EG Strauss JH Strauss (1987)ArticleTitleConserved elements in the 3′ untranslated region of flavivirus RNAs and potential cyclization sequences_J Mol Biol_ 198 33–41Occurrence Handle2828633Occurrence Handle10.1016/0022-2836(87)90455-4Occurrence Handle1:CAS:528:DyaL1cXjt1Ortw%3D%3D ArticlePubMedCAS Google Scholar
TA Hall (2001) BioEdit Department of Microbiology, North Carolina State University Raleigh, NC Google Scholar
InstitutionalAuthorNameICTV (International Committee on the Taxonomy of Viruses) (2005)NoChapterTitle CM Fauquet MA Mayo J Maniloff U Desselberger LA Ball (Eds) Virus taxonomy: classification and nomenclature of viruses Elsevier San Diego Google Scholar
N Karabatsos (1985) International catalogue of arbovirusesEditionNumber3 American Society of Tropical Medicine and Hygiene San Antonio, TX Google Scholar
AA Khromykh H Meka KJ Guyatt EG Westaway (2001)ArticleTitleEssential role of cyclization sequences in flavivirus RNA replication_J Virol_ 75 6719–6728Occurrence Handle11413342Occurrence Handle10.1128/JVI.75.14.6719-6728.2001Occurrence Handle1:CAS:528:DC%2BD3MXkvFSitbY%3D ArticlePubMedCAS Google Scholar
G Kuno G-JJ Chang KR Tsuchiya N Karabatsos CB Cropp (1998)ArticleTitlePhylogeny of the genus FlavivirusJ Virol72 73–83Occurrence Handle9420202Occurrence Handle1:CAS:528:DyaK1cXhvVerug%3D%3D PubMedCAS Google Scholar
G Kuno G-JJ Chang (2005)ArticleTitleBiological transmission of arboviruses: reexamination of and new insights into components, mechanisms, and unique traits as well as their Evolutionary trends_Clin Microbiol Rev_ 18 608–637Occurrence Handle16223950Occurrence Handle10.1128/CMR.18.4.608-637.2005Occurrence Handle1:CAS:528:DC%2BD2MXht1Wrsr%2FL ArticlePubMedCAS Google Scholar
J Li R Bhuvanakantham J Howe M-L Ng (2006)ArticleTitleThe glycosylation site in the envelope protein of West Nile virus (Sarafend) plays an important role in replication and maturation processes_J Gen Virol_ 87 613–622Occurrence Handle16476982Occurrence Handle10.1099/vir.0.81320-0Occurrence Handle1:CAS:528:DC%2BD28XitVahtr8%3D ArticlePubMedCAS Google Scholar
KB Nicholas HB Nicholas DW Deerfield (1997)ArticleTitleGeneDoc: analysis and visualization of genetic variation_EMBONet News_ 4 14–18 Google Scholar
K Osatomi H Sumiyoshi (1990)ArticleTitleComplete nucleotide sequence of dengue type 3 virus genome RNA_Virology_ 176 643–647Occurrence Handle2345967Occurrence Handle10.1016/0042-6822(90)90037-ROccurrence Handle1:CAS:528:DyaK3cXltFSju7o%3D ArticlePubMedCAS Google Scholar
V Pierre M-T Drouet V Deubel (1994)ArticleTitleIdentification of mosquito-borne flavivirus sequences using universal primers and reverse transcription/polymerase chain reaction_Res Virol_ 145 179–188 Google Scholar
V Proutski EA Gould EC Holmes (1997)ArticleTitleSecondary structure of the 3′ untranslated region of flaviviruses: similarities and differences_Nucleic Acids Res_ 25 1194–1202Occurrence Handle9092629Occurrence Handle10.1093/nar/25.6.1194Occurrence Handle1:CAS:528:DyaK2sXitFyqu7c%3D ArticlePubMedCAS Google Scholar
SC Ray (1999) Simplot School of Medicine, Johns Hopkins University Baltimore, MD Google Scholar
CM Rice JH Strauss (1990)ArticleTitleProduction of flavivirus polypeptides by proteolytic processing_Semin Virol_ 1 357–367Occurrence Handle1:CAS:528:DyaK38XlsFWntg%3D%3D CAS Google Scholar
JD Thompson TJ Gibson F Plewniak F Jeanmougin DJ Higgins (1997)ArticleTitleThe Clustal X window interface: flexible strategies for multiple sequence alignment aided by quality analysis tools_Nucleic Acids Res_ 25 4876–4882Occurrence Handle9396791Occurrence Handle10.1093/nar/25.24.4876Occurrence Handle1:CAS:528:DyaK1cXntFyntQ%3D%3D ArticlePubMedCAS Google Scholar
V Vorndam JH Mathews ADT Barrett JT Roehrig DW Trent (1993)ArticleTitleMolecular and biological character ization of a non-glycosylated isolate of St. Louis encephalitis virus_J Gen Virol_ 74 2653–2660Occurrence Handle7506301Occurrence Handle1:CAS:528:DyaK2cXkvFOkug%3D%3DOccurrence Handle10.1099/0022-1317-74-12-2653 ArticlePubMedCAS Google Scholar
G Winkler FX Heinz C Kunz (1987)ArticleTitleStudies on the glycosylation of flavivirus E proteins and the role of carbohydrates in antigenic structure_Virology_ 159 237–243Occurrence Handle2441520Occurrence Handle10.1016/0042-6822(87)90460-0Occurrence Handle1:CAS:528:DyaL2sXltFeqsLg%3D ArticlePubMedCAS Google Scholar
BT Zhao E Mackow A Buckler-White L Markoff RM Chanock CJ Lai Y Makino (1986)ArticleTitleCloning full-length dengue type 4 viral DNA sequences: analysis of genes coding for structural proteins_Virology_ 155 77–88Occurrence Handle3022479Occurrence Handle10.1016/0042-6822(86)90169-8Occurrence Handle1:CAS:528:DyaL2sXnvFCgsQ%3D%3D ArticlePubMedCAS Google Scholar
Zuker M, Mathews DH, Turner DH (1999) Algorithms and thermodynamics for RNA secondary structure prediction: a practical guide. In: Barciszewski J, Clark BFC (eds) RNA biochemistry and biotechnology. Kluwer Dardsecht, pp 11–43