A member of the virus family Narnaviridae from the plant pathogenic oomycete Phytophthora infestans (original) (raw)
Altschul SF, Madden TL, Schaffer AA, Zhang JH, Zhang Z, Miller W, Lipman DJ (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25:3389–3402 ArticlePubMedCAS Google Scholar
Attoui H, Billoir F, Cantaloube JF, Biagini P, de Micco P, de Lamballerie X (2000) Strategies for the sequence determination of viral dsRNA genomes. J Virol Methods 89:147–158 ArticlePubMedCAS Google Scholar
Buck KW, Esteban R, Hillman BI (2005) Family Narnaviridae. In: Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (eds) Virus taxonomy: eighth report of the international committee for the taxonomy of viruses. Academic Press, New York, pp 715–757 Google Scholar
Cai G, Fry WE, Hillman BI, Myers K (2009) An RNA virus from Phytophthora infestans with no apparent similarity to known viruses. Phytopathology 99:S18 Google Scholar
Cai G, Myers K, Hillman BI, Fry WE (2009) A novel virus of the late blight pathogen, Phytophthora infestans, with two RNA segments and a supergroup 1 RNA-dependent RNA polymerase. Virology 392:52–61 ArticlePubMedCAS Google Scholar
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32:1792–1797 ArticlePubMedCAS Google Scholar
Esteban LM, Rodriguez-Cousino N, Esteban R (1992) T double-stranded RNA (dsRNA) sequence reveals that T and W dsRNAs form a new RNA family in Saccharomyces cerevisiae. Identification of 23 S RNA as the single-stranded form of T dsRNA. J Biol Chem 267:10874–10881 PubMedCAS Google Scholar
Ghabrial SA, Suzuki N (2009) Viruses of plant pathogenic fungi. Annu Rev Phytopathol 47:353–384 ArticlePubMedCAS Google Scholar
Goodwin SB, Drenth A, Fry WE (1992) Cloning and genetic analyses of two highly polymorphic, moderately repetitive nuclear DNAs from Phytophthora infestans. Curr Genet 22:107–115 ArticlePubMedCAS Google Scholar
Hong Y, Cole TE, Brasier CM, Buck KW (1998) Evolutionary relationships among putative RNA-dependent RNA polymerases encoded by a mitochondrial virus-like RNA in the dutch elm disease fungus, Ophiostoma novo-ulmi, by other viruses and virus-like RNAs and by the Arabidopsis mitochondrial genome. Virology 246:158–169 ArticlePubMedCAS Google Scholar
Hong Y, Dover SL, Cole TE, Brasier CM, Buck KW (1999) Multiple mitochondrial viruses in an isolate of the dutch elm disease fungus Ophiostoma novo-ulmi. Virology 258:118–127 ArticlePubMedCAS Google Scholar
Karlovsky P, Fartmann B (1992) Genetic-code and phylogenetic origin of oomycetous mitochondria. J Mol Evol 34:254–258 ArticlePubMedCAS Google Scholar
Koonin EV, Dolja VV (1993) Evolution and taxonomy of positive-strand RNA viruses: Implications of comparative analysis of amino acid sequences. Crit Rev Biochem Mol Biol 28:375–430 ArticlePubMedCAS Google Scholar
Lakshman DK, Jian J, Tavantzis SM (1998) A double-stranded RNA element from a hypovirulent strain of Rhizoctonia solani occurs in DNA form and is genetically related to the pentafunctional AROM protein of the shikimate pathway. Proc Natl Acad Sci 95:6425–6429 ArticlePubMedCAS Google Scholar
Lambden PR, Cooke SJ, Caul EO, Clarke IN (1992) Cloning of noncultivatable human rotavirus by single primer amplification. J Virol 66:1817–1822 PubMedCAS Google Scholar
Matsumoto Y, Wickner RB (1991) Yeast 20 S RNA replicon. Replication intermediates and encoded putative RNA polymerase. J Biol Chem 266:12779–12783 PubMedCAS Google Scholar
Milgroom MG, Hillman BI (2011) The ecology and evolution of fungal viruses. In: Hurst CJ (ed) Studies in Viral Ecology. John Wiley & Sons, Inc, New York, pp 221–257 Google Scholar
Morris TJ, Dodds JA (1979) Isolation and analysis of double-stranded RNA from virus-infected plant and fungal tissue. Phytopathology 69:854–858 ArticleCAS Google Scholar
Park Y, Chen X, Punja ZK (2006) Molecular and biological characterization of a mitovirus in Chalara elegans (Thielaviopsis basicola). Phytopathology 96:468–479 ArticlePubMedCAS Google Scholar
Polashock JJ, Hillman BI (1994) A small mitochondrial double-stranded (ds) RNA element associated with a hypovirulent strain of the chestnut blight fungus and ancestrally related to yeast cytoplasmic T and W dsRNAs. Proc Natl Acad Sci USA 91:8680–8684 ArticlePubMedCAS Google Scholar
Rastgou M, Habibi MK, Izadpanah K, Masenga V, Milne RG, Wolf YI, Koonin EV, Turina M (2009) Molecular characterization of the plant virus genus Ourmiavirus and evidence of inter-kingdom reassortment of viral genome segments as its possible route of origin. J Gen Virol 90:2525–2535 ArticlePubMedCAS Google Scholar
Rodriguez-Cousino N, Solorzano A, Fujimura T, Esteban R (1998) Yeast positive-stranded virus-like RNA replicons - 20 S and 23 S RNA terminal nucleotide sequences and 3′ end secondary structures resemble those of RNA coliphages. J Biol Chem 273:20363–20371 ArticlePubMedCAS Google Scholar
Sachay DJ, Hudspeth DSS, Nadler SA, Hudspeth MES (1993) Oomycete mtDNA: Phytophthora genes for cytochrome c oxidase use an unmodified genetic code and encode proteins most similar to those of plants. Exp Mycol 17:7–23 ArticleCAS Google Scholar
Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning. In: A Laboratory Mannual, 2nd edn. Cold Spring Harbor Laboratory Press
Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol. doi:10.1093/molbev/msr1121 Google Scholar
Wickner RB (2001) Viruses of yeasts, fungi, and parasitic microorganisms. In: Knipe DM, Howley PM (eds) Fields Virology. Lippencott Williams & Wilkens, Philadelphia, pp 629–658 Google Scholar
Wu M, Zhang L, Li G, Jiang D, Ghabrial SA (2010) Genome characterization of a debilitation-associated mitovirus infecting the phytopathogenic fungus Botrytis cinerea. Virology 406:117–126 ArticlePubMedCAS Google Scholar