Telomere-specific non-LTR retrotransposons and telomere maintenance in the silkworm, Bombyx mori (original) (raw)

• Abad JP, De Pablos B, Osoegawa K, De Jong PJ, Martin-Gallardo A, Villasante A (2004) TAHRE, a novel telomeric retrotransposon from Drosophila melanogaster, reveals the origin of Drosophila telomeres. Mol Biol Evol 21: 1620–1624.
  Article PubMed Google Scholar
• Anzai T, Takahashi H, Fujiwara H (2001) Sequence-specific recognition and cleavage of telomeric repeat (TTAGG)n by endonuclease of non-long terminal repeat retrotransposon TRAS1. Mol Cell Biol 21: 100–108.
  Article PubMed Google Scholar
• Anzai T, Osanai M, Hamada M, Fujiwara H (2005) Functional roles of read-through 28S rRNA sequence in in vivo retrotransposition of non-LTR retrotransposon, R1Bm. Nucl Acids Res 33: 1993–2002.
  Google Scholar
• Biessmann H, Mason JM (2003) Telomerase-independent mechanisms of telomere elongation. Cell Mol Life Sci 60: 2325–2333.
  Article PubMed Google Scholar
• Blackburn EH (1991) Structure and function of telomeres. Nature 350: 569–573.
  Article PubMed Google Scholar
• Casacuberta E, Pardue ML (2003a) Transposon telomeres are widely distributed in the Drosophila genus: TART elements in the virilis group. Proc Natl Acad Sci USA 100: 3363–3368.
  PubMed Google Scholar
• Casacuberta E, Pardue ML (2003b) HeT-A elements in Drosophila virilis: Retrotransposon telomeres are conserved across the Drosophila genus. Proc Natl Acad Sci USA 100: 14091–14096.
  Article PubMed Google Scholar
• Chambeyron S, Bucheton A, Busseau I (2002) Tandem UAA repeats at the 3′-end of the transcript are essential for the precise initiation of reverse transcription of the I factor in Drosophila melanogaster. J Biol Chem 277: 17877–17882.
  Article PubMed Google Scholar
• Christensen S, Pont-Kingdon G, Carroll D (2000) Target specificity of the endonuclease from the Xenopus laevis non-long terminal repeat retrotransposon Tx1L. Mol Cell Biol 20: 1219–1226.
  Article PubMed Google Scholar
• Cohn M, Edstrom JE (1992) Telomere-associated repeats in Chironomus form discrete subfamilies generated by gene conversion. J Mol Evol 35: 114–122.
  Article PubMed Google Scholar
• Eickbush TH (1997) Telomerase and retrotransposons: which came first? Science 277: 911–912.
  Article PubMed Google Scholar
• Feng Q, Schumann G, Boeke JD (1998) Retrotransposon R1Bm endonuclease cleaves the target sequence. Proc Natl Acad Sci USA 95: 2083–2088.
  Article PubMed Google Scholar
• Frydrychoba R, Grossman P, Trubac P, Vitkova M, Marec F (2004) Phylogenetic distribution of TTAGG telomeric repeats in insects. Genome 47: 163–178.
  Article Google Scholar
• Fujiwara H, Ninaki O, Kobayashi M, Kusuda J, Maekawa H (1991) Chromosomal fragment responsible for genetic mosaicism in larval body marking of the silkworm, Bombyx mori. Genet Res 57: 11–16.
  Google Scholar
• Fujiwara H, Yanagawa M, Ishikawa H (1994) Mosaic formation by developmental loss of a chromosomal fragment in a “mottled striped” mosaic strain of the silkworm, Bombyx mori. Roux’s Arch Dev Biol 203: 389–396.
  Article Google Scholar
• Fujiwara H, Nakazato Y, Okazaki S, Ninaki O (2000) Stability and telomere structure of chromosomal fragments in two different mosaic strains of the silkworm, Bombyx mori. Zool Sci 17: 743–750.
  Article Google Scholar
• Frydrychova R, Marec F (2002) Repeated losses of TTAGG telomere repeats in evolution of beetles (Coleoptera). Genetica 115: 179–187.
  PubMed Google Scholar
• Kahn T, Savitsky M, Georgiev P (2000) Attachment of HeT-A sequences to chromosomal termini in Drosophila melanogaster may occur by different mechanisms. Mol Cell Biol 20: 7634–7642.
  Article PubMed Google Scholar
• Kajikawa M, Okada N (2002) LINEs mobilize SINEs in the eel through a shared 3′ sequence. Cell 111: 433–444.
  Article PubMed Google Scholar
• Klapper W, Kuhne K, Singh KK et al. (1998) Longevity of lobsters is linked to ubiquitous telomerase expression. FEBS Lett 439: 143–146.
  Article PubMed Google Scholar
• Kojima KK, Fujiwara H (2003) Evolution of target specificity in R1 clade non-LTR retrotransposons. Mol Biol Evol 20: 351–361.
  Article PubMed Google Scholar
• Kojima KK, Fujiwara H (2004) Cross-genome screening of novel sequence-specific non-LTR retrotransposons: various multicopy RNA genes and microsatellites are selected as targets. Mol Biol Evol 21: 207–217.
  Article PubMed Google Scholar
• Kojima KK, Matsumoto T, Fujiwara H (2005) Eukaryotic translational coupling in UAAUG stop-start codons for the bicistronic RNA translation of non-LTR retrotransposon SART1. Mol Cell Biol (in press).
• Kubo Y, Okazaki S, Anzai T, Fujiwara H (2001) Structural and phylogenetic analysis of TRAS, telomeric repeat-specific non-LTR retrotransposon families in Lepidopteran insects. Mol Biol Evol 18: 848–857.
  PubMed Google Scholar
• Lamb J, Jarris PC, Wilkie AOM et al. (1993) De novo truncation of chromosome 16p and healing with (TTAGGG)n in the alpha thalassaemia/mental retardation syndorome (ATR-16). Am J Hum Genet 52: 668–676.
  PubMed Google Scholar
• Luan DD, Korman MH, Jakubuczak JL, Eickbush TH (1995) Reverse transcription of R2Bm RNA is primed by a nick at the chromosomal target site: a mechanism for non-LTR retrotransposition. Cell 72: 595–605.
  Article Google Scholar
• Lundblad V, Wright WE (1996) Telomeres and telomerase: a simple picture becomes complex. Cell 87: 369–375.
  PubMed Google Scholar
• Maita N, Anzai T, Aoyagi H, Mizuno H, Fujiwara H (2004) Crystal structure of the endonuclease domain encoded by the telomere-specific long interspersed nuclear element, TRAS1. J Biol Chem 24: 41067–41076.
  Article Google Scholar
• Malik HS, Burke WD, Eickbush TH (1999) The age and evolution of non-LTR retrotransposable elements. Mol Biol Evol 16: 793–805.
  PubMed Google Scholar
• Malik HS, Burke WD, Eickbush TH (2000) Putative telomerase catalytic subunits from Giardia lamblia and Caenorhabditis elegans. Gene 251: 101–108.
  Article PubMed Google Scholar
• Mandrioli M (2002) Cytogenetic characterization of telomeres in the holocentric chromosomes of the lepidopteran Mamestra brassicae. Chromosome Res 10: 279–286.
  Article Google Scholar
• Matsumoto T, Takahashi H, Fujiwara H (2004) Targeted nuclear import of open reading frame 1 is required for in vivo retrotransposition of a telomere-specific non-long terminal repeat retrotransposn, SART1. Mol Cell Biol 24: 105–122.
  Article PubMed Google Scholar
• Mita K, Kasahara M, Sasaki S et al. (2004) The genome sequence of silkworm, Bombyx mori. DNA Res 11: 27–35.
  PubMed Google Scholar
• Moore LL, Stanvitch G, Roth MB, Rosen D (2005) HCP-4/CENP-C promotes the prophase timing of centromere resolution by enabling the centromere association of HCP-6 in Caenorhabditis elegans. Mol Cell Biol 25: 2583–2592.
  Article PubMed Google Scholar
• Moran JV, Holmes SE, Naas TP et al. (1996) High frequency retrotransposition in cultured mammalian cells. Cell 87: 917– 927.
  Article PubMed Google Scholar
• Muller F, Wicky C, Spicher A, Tobler H (1991) New telomere formation after developmentally regulated chromosomal breakage during the process of chromatin diminution in Ascaris lumbricoides. Cell 67: 815–822.
  Article PubMed Google Scholar
• Murakami A, Imai HT (1974) Cytological evidence for holocentric chromosomes of the silkworm, Bombyx mori and B. mandarina, (Bombycidae, Lepidoptera). Chromosoma 80: 167–178.
  Article Google Scholar
• Nakamura TM, Morin GB, Chapman KB et al. (1997) Telomerase catalytic subunit homologs from fission yeast and human. Science 277: 955–959.
  Article PubMed Google Scholar
• Nielsen L, Schmidt ER, Edstrom JE (1990) Subrepeats result from regional DNA sequence conservation in tandem repeats in Chironomus telomeres. J Mol Biol 216: 577–584.
  Article PubMed Google Scholar
• Nokkala S, Kuznetsova VG, Maryanska-Nadachowska A, Nokkala C (2004) Holocentric chromosomes in meiosis. I. Restriction of the number of chiasmata in bivalents. Chromosome Res 12: 733–739.
  Article Google Scholar
• Okazaki S, Tsuchida K, Maekawa H, Ishikawa H, Fujiwara H (1993) Identification of a pentanucleotide telomeric sequence, (TTAGG)n, in the silkworm Bombyx mori and in other insects. Mol Cell Biol 13: 1424–1432.
  Google Scholar
• Okazaki S, Ishikawa H, Fujiwara, H (1995) Structural analysis of TRAS1, a novel family of telomeric repeat-associated retrotransposons in the silkworm, Bombyx mori. Mol Cell Biol 15: 4545–4552.
  PubMed Google Scholar
• Osanai M, Takahashi H, Kojima KK, Hamada M, Fujiwara H (2004) Essential motifs in the 3′ untranslated region required for retrotransposition and the precise start of the reverse transcription in non-long-terminal-repeat retrotransposon SART1. Mol Cell Biol 24: 7902–7913.
  Article PubMed Google Scholar
• Pardue ML, DeBaryshe PG (1999) Telomeres and telomerase: more than the end of the line. Chromosoma 108: 73–82.
  Article PubMed Google Scholar
• Pardue M-L, Rashkova S, Casacuberta E, DeBaryshe PG, George JA, Traverse KL (2005) Two retrotransposons maintain telomeres in Drosophila. Chromosome Research 13: 443–453.
  Google Scholar
• Rashkova S, Karam SE, Kellum R, Pardue ML (2002) Gag proteins of the two Drosophila telomeric retrotransposons are targeted to chromosome ends. J Cell Biol 159: 397–402.
  Article PubMed Google Scholar
• Rashkova S, Athanasiadis A, Pardue ML (2003) Intracellular targeting of Gag proteins of the Drosophila telomeric retrotransposons. J Virol 77: 6376–6384.
  Article PubMed Google Scholar
• Robin S, Chambeyron S, Brun C, Bucheton A, Busseau I (2002) Trans-complementation of an endonuclease-defective tagged I element as a tool for the study of retrotransposition in Drosophila melanogaster. Mol Genet Genomics 267: 829–834.
  Article PubMed Google Scholar
• Roth CW, Kobeski F, Walter MF, Biessmann H (1997) Chromosome end elongation by recombination in the mosquito Anopheles gambiae. Mol Cell Biol 17: 5176–5183.
  PubMed Google Scholar
• Sahara K, Marec F, Traut W (1999) TTAGG telomeric repeats in chromosomes of some insects and other arthropods. Chromosome Res 7: 449–460.
  Article Google Scholar
• Sasaki T, Fujiwara H (2000) Detection and distribution patterns of telomerase activity in insects. Eur J Biochem 267: 3025–3031.
  PubMed Google Scholar
• Takahashi H, Fujiwara H (1999) Transcription analysis of the telomeric repeat-specific retrotransposons TRAS1 and SART1 of the silkworm Bombyx mori. Nucleic Acids Res 27: 2015–2021.
  Article PubMed Google Scholar
• Takahashi H, Fujiwara H (2002) Transplantation of target site specificity by swapping the endonuclease domains of two LINEs. EMBO J 21: 408–417.
  Article PubMed Google Scholar
• Takahashi H, Okazaki S, Fujiwara, H (1997) A new family of site-specific retrotransposons, SART1, is inserted into telomeric repeats of the silkworm, Bombyx mori. Nucleic Acids Res 25: 1578–1584.
  Article PubMed Google Scholar
• Xia Q, Zhou Z, Lu C et al. (2004) A draft sequence for the genome of the domesticated silkworm (Bombyx mori). Science 306: 1937–1940.
  Article PubMed Google Scholar
• Xiong Y, Eickbush TH (1988) The site-specific ribosomal DNA insertion element R1Bm belongs to a class of non-long-terminal-repeat retrotransposons. Mol Cell Biol 8: 114–123.
  PubMed Google Scholar