A Molecular Analysis of Fecal and Mucosal Bacterial Communities in Irritable Bowel Syndrome (original) (raw)
Agrawal A, Whorwell PJ. Irritable bowel syndrome: diagnosis and management. Br Med J. 2006;332:280–283. ArticleCAS Google Scholar
Balsari A, Ceccarelli A, Dubini F, Fesce E, Poli G. The fecal microbial population in the irritable bowel syndrome. Microbiologica. 1982;5:185–194. CASPubMed Google Scholar
Bayliss CE, Bradley HK, Jones VA, Hunter JO. Some aspects of colonic microbial activity in irritable bowel syndrome associated with food intolerance. Ann Ist Super Sanita. 1986;22:959–963. CASPubMed Google Scholar
Dubini F, Balsari A. Midecamycin activity against aerobic and anaerobic bacteria. G Ital Chemioter. 1985;32:539–544. CASPubMed Google Scholar
Eckburg PB, Bik EM, Bernstein CN, et al. Diversity of the human intestinal microbial flora. Science. 2005;308:1635–1638. ArticlePubMed Google Scholar
Green GL, Brostoff J, Hudspith B, et al. Molecular characterization of the bacteria adherent to human colorectal mucosa. J Appl Microbiol. 2006;100:460–469. ArticleCASPubMed Google Scholar
Kang JY. Systematic review: the influence of geography and ethnicity in irritable bowel syndrome. Aliment Pharmacol Ther. 2005;21:663–676. ArticleCASPubMed Google Scholar
Kassinen A, Krogius-Kurikka L, Makivuokko H, et al. The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects. Gastroenterol. 2007;133:24–33. ArticleCAS Google Scholar
King TS, Elia M, Hunter JO. Abnormal colonic fermentation in irritable bowel syndrome. Lancet. 1998;352:1187–1189. ArticleCASPubMed Google Scholar
Lane DJ. 16S/23S rRNA Sequencing. In: Stackebrandt E, Goodfellow M, eds. Nucleic acids techniques in bacterial systematics. Chichester: Wiley; 1991:115–175. Google Scholar
Lepage P, Seksik P, Sutren M, et al. Biodiversity of the mucosa-associated microbiota is stable along the distal digestive tract in healthy individuals and patients with IBD. Inflamm Bowel Dis. 2005;11:473–480. ArticlePubMed Google Scholar
Madden JA, Hunter JO. A review of the role of the gut microflora in irritable bowel syndrome and the effects of probiotics. Br J Nutr. 2002;88(suppl 1):S67–S72. ArticleCASPubMed Google Scholar
Malinen E, Rinttila T, Kajander K, et al. Analysis of the fecal microbiota of irritable bowel syndrome patients and healthy controls with real-time PCR. Am J Gastroenterol. 2005;100:373–382. ArticleCASPubMed Google Scholar
Mangin I, Bonnet R, Seksik P, et al. Molecular inventory of faecal microflora in patients with Crohn’s disease. FEMS Microbiol Ecol. 2004;50:25–36. ArticleCASPubMed Google Scholar
Manichanh C, Rigottier-Gois L, Bonnaud E, et al. Reduced diversity of faecal microbiota in Crohn’s disease revealed by a metagenomic approach. Gut. 2006;55:205–211. ArticleCASPubMed Google Scholar
Matto J, Maunuksela L, Kajander K, et al. Composition and temporal stability of gastrointestinal microbiota in irritable bowel syndrome—a longitudinal study in IBS and control subjects. FEMS Immunol Med Microbiol. 2005;43:213–222. ArticlePubMed Google Scholar
Maukonen J, Satokari R, Matto J, Soderlund H, Mattila-Sandholm T, Saarela M. Prevalence and temporal stability of selected clostridial groups in irritable bowel syndrome in relation to predominant faecal bacteria. J Med Microbiol. 2006;55:625–633. ArticleCASPubMed Google Scholar
Nandi R, Sengupta S. Microbial production of hydrogen: an overview. Crit Rev Microbiol. 1998;24:61–84. ArticleCASPubMed Google Scholar
Nubel U, Engelen B, Felske A, et al. Sequence heterogeneities of genes encoding 16S rRNAs in Paenibacillus polymyxa detected by temperature gradient gel electrophoresis. J Bacteriol. 1996;178:5636–5643. CASPubMed Google Scholar
O’Mahony L, McCarthy J, Kelly P, et al. Lactobacillus and Bifidobacterium in irritable bowel syndrome: symptom responses and relationship to cytokine profiles. Gastroenterol. 2005;128:541–551. Article Google Scholar
Pimentel M, Chow EJ, Lin HC. Eradication of small intestinal bacterial overgrowth reduces symptoms of irritable bowel syndrome. Am J Gastroenterol. 2000;95:3503–3506. ArticleCASPubMed Google Scholar
Pimentel M, Chow EJ, Lin HC. Normalization of lactulose breath testing correlates with symptom improvement in irritable bowel syndrome. A double-blind, randomized, placebo-controlled study. Am J Gastroenterol. 2003;98:412–419. PubMed Google Scholar
Pimentel M, Lin HC, Enayati P, et al. Methane, a gas produced by enteric bacteria, slows intestinal transit and augments small intestinal contractile activity. Am J Physiol Gastrointest Liver Physiol. 2005;290:G1089–G1095. ArticlePubMed Google Scholar
Posserud I, Stotzer PO, Bjornsson E, Abrahamsson H, Simren M. Small intestinal bacterial overgrowth in patients with irritable bowel syndrome. Gut. 2006;56:802–808. ArticlePubMed Google Scholar
Quigley EM. Changing face of irritable bowel syndrome. World J Gastroenterol. 2006;12:1–5. PubMed Google Scholar
Rinttila T, Kassinen A, Malinen E, Krogius L, Palva A. Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR. J Appl Microbiol. 2004;97:1166–1177. ArticleCASPubMed Google Scholar
Savage DC. Microbial ecology of the gastrointestinal tract. Annu Rev Microbiol. 1977;31:107–133. ArticleCASPubMed Google Scholar
Scanlan PD, Shanahan F, O’Mahony C, Marchesi JR. Culture-independent analyses of the temporal variation of the dominant faecal microbiota and targeted bacterial sub-groups in Crohn’s disease. J Clin Microbiol. 2006;44:3980–3988. ArticleCASPubMed Google Scholar
Seksik P, Lepage P, de la Cochetiere MF, et al. Search for localized dysbiosis in Crohn’s disease ulcerations by temporal temperature gradient gel electrophoresis of 16S rRNA. J Clin Microbiol. 2005;43:4654–4658. ArticleCASPubMed Google Scholar
Shanahan F. Host-flora interactions in inflammatory bowel disease. Inflamm Bowel Dis. 2004;10:S16–S24. ArticlePubMed Google Scholar
Si JM, Yu YC, Fan YJ, Chen SJ. Intestinal microecology and quality of life in irritable bowel syndrome patients. World J Gastroenterol. 2004;10:1802–1805. PubMed Google Scholar
Swidsinski A, Weber J, Loening-Baucke V, Hale LP, Lochs H. Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease. J Clin Microbiol. 2005;43:3380–3389. ArticlePubMed Google Scholar
Thompson WG, Longstreth GF, Drossman DA, Heaton KW, Irvine EJ, Muller-Lissner SA. Functional bowel disorders and functional abdominal pain. Gut. 1999;45:43ii–47. Google Scholar
van de Peer Y, Chapelle S, Dewachter R. A quantitative map of nucleotide substitution rates in bacterial rRNA. Nucl Acid Res. 1996;24:3381–3391. Article Google Scholar
Vanhoutte T, Huys G, De Brandt E, Swings J. Temporal stability analysis of the microbiota in human feces by denaturing gradient gel electrophoresis using universal and group-specific 16S rRNA gene primers. FEMS Microbiol Ecol. 2004;48:437–446. ArticleCASPubMed Google Scholar
Zhang M, Liu B, Zhang Y, Wei H, Lei Y, Zhao L. Structural shifts of mucosa-associated Lactobacilli and Clostridium leptum subgroup in patients with ulcerative colitis. J Clin Microbiol. 2007;45:496–500. ArticleCASPubMed Google Scholar
Zoetendal EG, von Wright A, Vilpponen-Salmela T, Ben Amor K, Akkermans AD, de Vos WM. Mucosa-associated bacteria in the human gastrointestinal tract are uniformly distributed along the colon and differ from the community recovered from feces. Appl Environ Microbiol. 2002;68:3401–3407. ArticleCASPubMed Google Scholar