Hierarchical Bayesian modelling of early detection surveillance for plant pest invasions (original) (raw)
Barclay H, Humble L (2009) Probability models to facilitate a declaration that an exotic insect species has not yet invaded an area. Biol Invas 11: 1267–1280 Article Google Scholar
Barrett S, Whittle P, Mengersen K, Stoklosa R (2009) Biosecurity threats: the design of surveillance systems, based on power and risk. Environ Ecol Stat. doi:10.1007/s10651-009-0113-4
Barry S, Elith J (2006) Error and uncertainty in habitat models. J Appl Ecol 43(3): 413–423 Article Google Scholar
Bogich TL, Liebhold AM, Shea K (2008) To sample or eradicate? A cost minimization model for monitoring and managing an invasive species. J Appl Ecol 45(4): 1134–1142 Article Google Scholar
Brooks SP, Gelman A (1998) General methods for monitoring convergence of iterative simulations. J Comput Graph Stat 7(4): 434–455 Article Google Scholar
Buckland ST, Newman KB, Fernandez C, Thomas L, Harwood J (2007) Embedding population dynamics models in inference. Stat Sci 22(1): 44–58 Article Google Scholar
Cannon RM (2002) Demonstrating disease freedom—combining confidence levels. Prev Vet Med 52(3-4): 227–249 ArticlePubMedCAS Google Scholar
Clark JS, Lewis M, McLachlan JS, HilleRisLambers J (2003) Estimating population spread: what can we forecast and how well. Ecology 84(8): 1979–1988 Article Google Scholar
Colunga-Garcia M, Haack RA, Adelaja AO (2009) Freight transportation and the potential for invasions of exotic insects in urban and periurban forests of the United States. J Econ Entomol 102(1): 237–246 ArticlePubMed Google Scholar
Cook A, Marion G, Butler A, Gibson G (2007) Bayesian inference for the spatio-temporal invasion of alien species. Bull Math Biol 69(6): 2005–2025 ArticlePubMed Google Scholar
Cressie N, Calder CA, Clark JS, Ver Hoef JM, Wikle CK (2009) Accounting for uncertainty in ecological analysis: The strengths and limitations of hierarchical statistical modeling. Ecol Appl 19(3): 553–570 ArticlePubMed Google Scholar
Dybiec B, Kleczkowski A, Gilligan CA (2004) Controlling disease spread on networks with incomplete knowledge. Phys Rev E 70(6)
Fitzpatrick MC, Weltzin JF, Sanders NJ, Dunn RR (2007) The biogeography of prediction error: why does the introduced range of the fire ant over-predict its native range. Glob Ecol Biogeogr 16(1): 24–33 Article Google Scholar
Gelman A, Carlin J, Stern H, Rubin D (2004) Bayesian data analysis. 2. Chapman and Hall, Boca Raton Google Scholar
Hastings A, Cuddington K, Davies KF, Dugaw CJ, Elmendorf S, Freestone A, Harrison S, Holland M, Lambrinos J, Malvadkar U, Melbourne BA, Moore K, Taylor C, Thomson D (2005) The spatial spread of invasions: new developments in theory and evidence. Ecol Lett 8(1): 91–101 Article Google Scholar
Hauser CE, McCarthy MA (2009) Streamlining ‘search and destroy’: cost-effective surveillance for invasive species management. Ecol Lett 12(7): 683–692 ArticlePubMed Google Scholar
Hooten M, Wikle C, Dorazio R, Royle J (2007) Hierarchical spatio-temporal matrix models for characterizing invasions. Biometrics 63(2): 558–567 ArticlePubMed Google Scholar
Hooten MB, Wikle CK (2008) A hierarchical Bayesian non-linear spatio-temporal model for the spread of invasive species with application to the eurasian collared-dove. Environ Ecol Stat 15: 59–70 Article Google Scholar
Hulme PE (2006) Beyond control: wider implications for the management of biological invasions. J Appl Ecol 43(5): 835–847 Article Google Scholar
Kawasaki K, Takasu F, Caswell H, Shigesada N (2006) How does stochasticity in colonization accelerate the speed of invasion in a cellular automaton model. Ecol Res 21(3): 334–345 Article Google Scholar
Koch FH, Yemshanov D, McKenney DW, Smith WD (2009) Evaluating critical uncertainty thresholds in a spatial model of forest pest invasion risk. Risk Anal 29(9): 1227–1241 ArticlePubMed Google Scholar
Liebhold AM, Tobin PC (2008) Population ecology of insect invasions and their management. Annu Rev Entomol 53: 387–408 ArticlePubMedCAS Google Scholar
Mack RN, Simberloff D, Lonsdale WM, Evans H, Clout M, Bazzaz FA (2000) Biotic invasions: causes, epidemiology, global consequences, and control. Ecol Appl 10(3): 689–710 Article Google Scholar
Manjunath KL, Halbert SE, Ramadugu C, Webb S, Lee RF (2008) Detection of ‘Candidatus Liberibacter asiaticus’ in Diaphorina citri and its importance in the management of citrus huanglongbing in Florida. Phytopathology 98(4): 387–396 ArticlePubMedCAS Google Scholar
Maynard GV, Hamilton JG, Grimshaw JF (2004) Quarantine—phytosanitary, sanitary and incursion management: an Australian entomological perspective. Aust J Entomol 43: 318–328 Article Google Scholar
Myers JH, Simberloff D, Kuris AM, Carey JR (2000) Eradication revisited: dealing with exotic species. Trends Ecol Evol 15(8): 316–320 ArticlePubMed Google Scholar
Panetta FD, Lawes R (2005) Evaluation of weed eradication programs: the delimitation of extent. Divers Distribut 11(5): 435–442 Article Google Scholar
Royle JA (2006) Site occupancy models with heterogeneous detection probabilities. Biometrics 62(1): 97–102 ArticlePubMed Google Scholar
Royle JA, Dorazio RM (2006) Hierarchical models of animal abundance and occurrence. J Agric Biol Environ Stat 11(3): 249–263 Article Google Scholar
Royle JA, Kery M (2007) A Bayesian state-space formulation of dynamic occupancy models. Ecology 88(7): 1813–1823 ArticlePubMed Google Scholar
Shigesada N, Kawasaki K, Takeda Y (1995) Modeling stratified diffusion in biological invasions. Am Natural 146(2): 229–251 Article Google Scholar
Simberloff D (2005) The politics of assessing risk for biological invasions: the USA as a case study. Trends Ecol Evol 20(5): 216–222 ArticlePubMed Google Scholar
Spiegelhalter D, Thomas A, Best N, Lunn D (2003) WinBUGS user manual version 1.4. http://www.mrc-bsu.cam.ac.uk/bugs, Accessed 21 Jan 2010
Stark KDC, Regula G, Hernandez J, Knopf L, Fuchs K, Morris RS, Davies P (2006) Concepts for risk-based surveillance in the field of veterinary medicine and veterinary public health: review of current approaches. BMC Health Services Res 6: 1–8 Article Google Scholar
Stohlgren TJ, Schnase JL (2006) Risk analysis for biological hazards: what we need to know about invasive species. Risk Anal 26(1): 163–173 ArticlePubMed Google Scholar
Thomas A, O’Hara B, Ligges U, Sturtz S (2006) Making BUGS open. R News 6(1): 12–17 Google Scholar
Wikle CK (2003) Hierarchical Bayesian models for predicting the spread of ecological processes. Ecology 84(6): 1382–1394 Article Google Scholar