The genetic diversity of Icelandic populations of two barley leaf pathogens, Rhynchosporium commune and Pyrenophora teres (original) (raw)

References

• Agapow, P. M., & Burt, A. (2001). Indices of multilocus linkage disequilibrium. Molecular Ecology Notes, 1(1–2), 101–102.
  Article CAS Google Scholar
• Arabi, M. I. E., Jawhar, M., & Al-Shehadah, E. (2008). Molecular and pathogenic variation identified among isolates of Rhynchosporium secalis from Syria. Journal of Plant Pathology, 90(2), 179–184.
  CAS Google Scholar
• Badr, A., Muller, K., Schafer-Pregl, R., El Rabey, H., Effgen, S., Ibrahim, H. H., Pozzi, C., Rohde, W., & Salamini, F. (2000). On the origin and domestication history of barley (Hordeum vulgare). Molecular Biology and Evolution, 17(4), 499–510.
  Article PubMed CAS Google Scholar
• Bogucki, P. (2000). How agriculture came to north-central Europe. In: Europe’s First Farmers, 1st edn. Cambridge University Press. Cambridge, United Kingdom.
• Brown, A. H. D., Feldman, M. W., & Nevo, E. (1980). Multilocus structure of natural populations of Hordeum spontaneum. Genetics, 96(2), 523–536.
  PubMed CAS Google Scholar
• Brown, M., Steffenson, B. J., & Webster, R. K. (1993). Host range of Pyrenophora teres f. teres isolates from California. Plant Disease, 77(9), 942.
  Article Google Scholar
• Cavalli-Sforza, L. L., & Edwards, A. W. F. (1967). Phylogenetic analysis: models and estimation procedures. American Journal of Human Genetics, 19, 233–257.
  PubMed CAS Google Scholar
• Conners, I. L. (1967). An annotated index of plant diseases in Canada and fungi recorded on plants in Alaska, Canada and Greenland. Canada: Dept. of Agriculture. Research Branch.
  Google Scholar
• Corander, J., & Marttinen, P. (2006). Bayesian identification of admixture events using multilocus molecular markers. Molecular Ecology, 15(10), 2833–2843.
  Article PubMed Google Scholar
• Corander, J., Waldmann, P., Marttinen, P., & Sillanpaa, M. J. (2004). BAPS 2: Enhanced possibilities for the analysis of genetic population structure. Bioinformatics, 20(15), 2363–2369.
  Article PubMed CAS Google Scholar
• Cornuet, J. M., & Luikart, G. (1996). Description and power analysis of two tests for detecting recent population bottlenecks from allele frequency data. Genetics, 144(4), 2001–2014.
  PubMed CAS Google Scholar
• Excoffier, L., Laval, G., & Schneider, S. (2005). Arlequin (version 3.0): an integrated software package for population genetics data analysis. Evolutionary Bioinformatics Online, 1, 47–50.
  CAS Google Scholar
• Foister, C. E. (1961). The economic plant diseases of Scotland. Technical Bulletin of the Department of Agriculture and Fisheries Scotland, 1, 1–210.
  Google Scholar
• Fountaine, J. M., Shaw, M. W., Ward, E., & Fraaije, B. A. (2010). The role of seeds and airborne inoculum in the initiation of leaf blotch (Rhynchosporium secalis) epidemics in winter barley. Plant Pathology, 59(2), 330–337.
  Article CAS Google Scholar
• Ginns, J. H. (1986). Compendium of plant disease and decay fungi in Canada, 1960 – 1980. Ottawa: Canadian Government Publishing Centre.
  Book Google Scholar
• Gordon, D. M. (1997). The genetic structure of Escherichia coli populations in feral house mice. Microbiology, 143(Pt 6), 2039–2046.
  Article PubMed CAS Google Scholar
• Goudet, J. (1995). FSTAT (Version 1.2): a computer program to calculate F-statistics. Journal of Heredity, 86(6), 485–486.
  Google Scholar
• Grand, L. F. (1985). North Carolina plant disease index. North Carolina Agricultural Research Service Technical Bulletin, 240, 1–157.
  Google Scholar
• Hermannsson, J. (1993). Kornrækt á Íslandi (in Icelandic). Ráðunautafundur, BÍ/LbhÍ, Reykjavik Iceland 178–187.
• Jordan, V. W. L. (1981). Aetiology of barley net blotch caused by Pyrenophora teres and some effects on yield. Plant Pathology, 30(2), 77–87.
  Article Google Scholar
• Jorgensen, J. (1977). Incidence of infections of barley seed by Pyrenophora graminea and Pyrenophora teres as revealed by freezing blotter method and disease counts in field. Seed Science and Technology, 5(1), 105–110.
  Google Scholar
• Karlsson, G. (2009). Lífsbjörg íslendinga frá 10. öld til 16. aldar (in Icelandic) (1st ed.). Reykjavik: University of Iceland Press.
  Google Scholar
• Khan, T. N., & Crosbie, G. B. (1988). Effect of scald (Rhynchosporium secalis (Oud.) J. Davis) infection on some quality characteristics of barley. Australian Journal of Experimental Agriculture, 28(6), 783–785.
  Article Google Scholar
• Kumar, S., Nei, M., Dudley, J., & Tamura, K. (2008). MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences. Briefings in Bioinformatics, 9(4), 299–306.
  Article PubMed CAS Google Scholar
• Lee, H. K., Tewari, J. P., & Turkington, T. K. (1999). Histopathology and isolation of Rhynchosporium secalis from infected barley seed. Seed Science and Technology, 27(2), 477–482.
  Google Scholar
• Leisova, L., Minarikova, V., Kucera, L., & Ovesna, J. (2005). Genetic diversity of Pyrenophora teres isolates as detected by AFLP analysis. Journal of Phytopathology, 153(10), 569–578.
  Article CAS Google Scholar
• Linde, C. C., Zala, M., Ceccarelli, S., & McDonald, B. A. (2003). Further evidence for sexual reproduction in Rhynchosporium secalis based on distribution and frequency of mating-type alleles. Fungal Genetics and Biology, 40(2), 115–125.
  Article PubMed CAS Google Scholar
• Linde, C. C., Zala, M., & McDonald, B. A. (2005). Isolation and characterization of microsatellite loci from the barley scald pathogen, Rhynchosporium secalis. Molecular Ecology Notes, 5, 546–548.
  Article CAS Google Scholar
• Linde, C. C., Zala, M., & McDonald, B. A. (2009). Molecular evidence for recent founder populations and human-mediated migration in the barley scald pathogen Rhynchosporium secalis. Molecular Phylogenetics and Evolution, 51(3), 454–464.
  Article PubMed CAS Google Scholar
• Liu, K., & Muse, S. V. (2005). PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics Applications Note, 21(9), 2128–2129.
  CAS Google Scholar
• Mäkelä, K. (1972). Rhynchosporium species on Finnish grasses. Karstenia, 13, 23–31.
  Google Scholar
• Maynard Smith, J., Smith, N. H., O’Rourke, M., & Spratt, B. G. (1993). How clonal are bacteria? Proceedings of the National Academy of Sciences of the United States of America, 90(10), 4384–4388.
  Article Google Scholar
• McDonald, B. A., & Linde, C. C. (2002). Pathogen population genetics, evolutionary potential, and durable resistance. Annual Review of Phytopathology, 40, 349–379.
  Article PubMed CAS Google Scholar
• Nei, M. (1987). Molecular evolutionary genetics (1st ed.). New York: Columbia University Press.
  Google Scholar
• Nei, M., Tajima, F., & Tateno, Y. (1983). Accuracy of estimated phylogenetic trees from molecular data. Journal of Molecular Evolution, 19(2), 153–170.
  Article PubMed CAS Google Scholar
• Peakall, R., & Smouse, P. E. (2006). GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes, 6, 288–295.
  Article Google Scholar
• Peltonen, S., Jalli, M., Kammiovirta, K., & Karjalainen, R. (1996). Genetic variation in Drechslera teres populations as indicated by RAPD markers. Annals of Applied Biology, 128(3), 465–477.
  Article CAS Google Scholar
• Pennycook, S. R. (1989). Plant diseases recorded in New Zealand. Plant Diseases Division, DSIR. Auckland, New Zealand.
• Rannala, B., & Mountain, J. (1997). Detecting immigration by using multilocus genotypes. Proceedings of the National Academy of Sciences of the United States of America, 94(17), 9197–9201.
  Article PubMed CAS Google Scholar
• Rau, D., Brown, A. H. D., Brubaker, C. L., Attene, G., Balmas, V., Saba, E., & Papa, R. (2003). Population genetic structure of Pyrenophora teres Drechs. the causal agent of net blotch in Sardinian landraces of barley (Hordeum vulgare L.). Theoretical and Applied Genetics, 106(5), 947–959.
  PubMed CAS Google Scholar
• Reynolds, J., Weir, B. S., & Cockerham, C. C. (1983). Estimation of the coancestry coefficient: Basis for a short-term genetic distance. Genetics, 105, 767–779.
  PubMed CAS Google Scholar
• Richardson, M. J. (1990). An Annotated List of Seed-borne Diseases. 4th edn. International Seed Testing Association.
• Robbertse, B., van der Rijst, M., van Aarde, I. M. R., Lennox, C., & Crous, P. W. (2001). DMI sensitivity and cross-resistance patterns of Rhynchosporium secalis isolates from South Africa. Crop Protection, 20(2), 97–102.
  Article CAS Google Scholar
• Rostoks, N., Zale, J. M., Soule, J., Brueggeman, R., Druka, A., Kudrna, D., Steffenson, B., & Kleinhofs, A. (2002). A barley gene family homologous to the maize rust resistance gene Rp1-D. Theoretical and applied genetics, 104(8), 1298–1306.
  Article PubMed CAS Google Scholar
• Salamati, S., & Tronsmo, A. M. (1997). Pathogenicity of Rhynchosporium secalis isolates from Norway on 30 cultivars of barley. Plant Pathology, 46, 416–424.
  Article Google Scholar
• Salamati, S., Zhan, J., Burdon, J. J., & McDonald, B. A. (2000). The genetic structure of field populations of Rhynchosporium secalis from three continents suggests moderate gene flow and regular recombination. Phytopathology, 90(8), 901–908.
  Article PubMed CAS Google Scholar
• Serenius, M., Mironenko, N., & Manninen, O. (2005). Genetic variation, occurrence of mating types and different forms of Pyrenophora teres causing net blotch of barley in Finland. Mycological Research, 109, 809–817.
  Article PubMed CAS Google Scholar
• Serenius, M., Manninen, O., Wallwork, H., & Williams, K. (2007). Genetic differentiation in Pyrenophora teres populations measured with AFLP markers. Mycological Research, 111, 213–223.
  Article PubMed CAS Google Scholar
• Shipton, W. A., Boyd, W. J. R., & Ali, S. M. (1974). Scald of barley. Review of Plant Pathology, 53, 840–861.
  Google Scholar
• Slatkin, M. (1995). A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139(1), 457–462.
  PubMed CAS Google Scholar
• Souza, V., Nguyen, T. T., Hudson, R. R., Piñero, D., & Lenski, R. E. (1992). Hierarchical analysis of linkage disequilibrium in Rhizobium populations: evidence for sex? Proceedings of the National Academy of Sciences of the United States of America, 89(17), 8389–8393.
  Article PubMed CAS Google Scholar
• Sprague, R. (1950). Diseases of cereals and grasses in North America (Fungi, except smuts and rusts). New York: The Ronald Press Company.
  Google Scholar
• Stefansson, T. S., & Hallsson, J. H. (2011). Analysis of the species diversity of leaf pathogens in Icelandic barley fields. Icelandic Agricultural Sciences, 24, 13–23.
  Google Scholar
• Taggart, P. J., Locke, T., Phillips, A. N., Pask, N., Hollomon, D. W., Kendall, S. J., Cooke, L. R., & Mercer, P. C. (1999). Benzimidazole resistance in Rhynchosporium secalis and its effect on barley leaf blotch control in the UK. Crop Protection, 18(4), 239–243.
  Article CAS Google Scholar
• Tajima, F. (1983). Evolutionary relationship of DNA-sequences in finite populations. Genetics, 105(2), 437–460.
  PubMed CAS Google Scholar
• von Korff, M., Udupa, S. M., Yahyaoui, A., & Baum, M. (2004). Genetic variation among Rhynchosporium secalis populations of West Asia and North Africa as revealed by RAPD and AFLP analysis. Journal of Phytopathology, 152(2), 106–113.
  Article Google Scholar
• Xi, K. N., Turkington, T., Meadus, J., Helm, J. H., & Tewari, J. (2003). Dynamics of Rhynchosporium secalis pathotypes in relation to barley cultivar resistance. Mycological Research, 107, 1485–1492.
  Article PubMed CAS Google Scholar
• Zaffarano, P. L., McDonald, B. A., & Linde, C. C. (2011). Two new species of Rhynchosporium. Mycologia, 103(1), 195–202.
  Article PubMed Google Scholar
• Zhan, J., Fitt, B. D. L., Pinnschmidt, H. O., Oxley, S. J. P., & Newton, A. C. (2008). Resistance, epidemiology and sustainable management of Rhynchosporium secalis populations on barley. Plant Pathology, 57(1), 1–14.
  Google Scholar

Download references