Analysis of microsatellites in major crops assessed by computational and experimental approaches (original) (raw)
References
Arzimanoglou I.I., Gilbert F. and Barber H.R.K.1998. Microsatellite instability in human solid tumors.Cancer82: 1808–1820. Google Scholar
Bates G. and Lehrach H.1994. Trinucleotide repeat expansions and human genetic disease.BioEssays16: 277–284. Google Scholar
Bennetzen J.L. and Freeling M.1993. Grasses as a single genetic system: Genome composition, colinearity and compatibility.Trends in Genetics9: 259–261. Google Scholar
Buchanan F.C., Adams L.J., Littlejohn R.P., Maddox J.F. and Crawford A.M.1994. Determination of evolutionary relationships among sheep breeds using microsatellites.Genomics22: 397–403. Google Scholar
Cardle L., Ramsay L., Milbourne D., Macaulay M., Marshall D. and Waugh R.2000. Computational and experimental characterization of physically clustered simple sequence repeats in plants.Genetics156: 847–854. Google Scholar
Chen X., Cho Y.G. and McCouch S.R.2002. Microsatellites in Oryza and other plant species.Mol Gen Genomics268: 331–343. Google Scholar
Chin E.C.L., Senior M.L., Shu H. and Smith J.S.C.1996. Maize simple repetitive DNA sequences: abundance and allele variation.Genome39: 866–873. Google Scholar
Fahima T., Röder M.S., Grama A. and Nevo E.1998. Microsatellite DNA polymorphism divergence in Triticum dicoccoides accessions highly resistant to yellow rust.Theor. Appl. Genet.96: 187–195. Google Scholar
Fahima T., Röder M.S., Wendehake K., Kirzhner V.M., Nevo E.2002. Microsatellite polymorphism in natural populations of wild emmer wheat, Triticum dicoccoides, in Israel.Theor. Appl. Genet.104: 17–29. Google Scholar
Fatokun C.A., Menacio-Hautea D.I., Danesh D. and Young N.D.1992. Evidence for orthologous seed weight genes in cowpea and mungbean based upon RFLP mapping.Genetics132: 841–846. Google Scholar
Gale M.D. and Devos K.M.1998. Comparative genetics in the grasses.Proc. Natl. Acad. Sci. USA95: 1971–1974. Google Scholar
Goff S.A., Ricke D., Lan T.H., et al.2002. A draft sequence of the rice genome (Oryza sativa L. ssp. Japonica).Sci.296: 92–100. Google Scholar
Gupta P.K., Balyan H.S., Edwards K.J., Isaac P., Korzun V., Röder M.S., Gautier M.F., Joudrier P., Schlatter A.R., Dubcovsky J., De la Pena R.C., Khairallah M., Penner G., Hayden M.J., Sharp P., Keller B., Wang R.C.C., Hardouin J.P., Jack P. and Leroy P.2002. Genetic mapping of 66 new microsatellite (SSR) loci in bread wheat.Theor. Appl. Genet.105: 413–422. Google Scholar
Hancock J.M.1995. The contribution of slippage-like processes to genome evolution.J. Mol. Evol.41: 1038–1047. Google Scholar
Huang X.Q., Börner A.B., Röder M.S. and Ganal M.W.2002. Assessing genetic diversity of wheat (Triticum aestivum L.) germplasm using microsatellite markers.Theor. Appl. Genet.105: 699–707. Google Scholar
Kantety R.V., La Rota M., Matthews D.E. and Sorrells M.E.2002. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat.Plant. Mol. Biol.48: 501–510. Google Scholar
Korzun V., Röder M.S., Ganal M.W., Worland A.J. and Law C.N.1998. Genetic analysis of the dwarfing gene _Rht_8 in wheat. Part I. Molecular mapping of Rht8 on the short arm of chromosome 2D of bread wheat (Triticum aestivum L.).Theor. Appl. Genet.96: 1104–1109. Google Scholar
Korzun V., Röder M.S., Worland A.J. and Börner A.B. 1997. Intrachromosomal mapping of the genes fro dwarfing (_Rht_12) and vernalisation response (_Vrn_1) in wheat by using RFLP and microsatellite markers.Plant Breeding116: 227–232. Google Scholar
Li C.D., Rossnagel B.G. and Scoles G.J.2000. The development of oat microsatellite markers and their use in identifying relationships among Avena species and oat cultivars.Theor. Appl. Genet.101: 1259–1268. Google Scholar
Liu X.M., Smith C.M. and Gill B.S.2002. Identification of microsatellite markers linked to Russian wheat aphid resistance genes Dn4 and Dn6.Theor. Appl. Genet.104: 1042–1048. Google Scholar
Loudet O., Chaillou S., Camilleri C., Bouchez D. and Daniel-Vedele F.2002. Bay-0 × Shahdara recombinant inbred line population: a powerful tool for the genetic dissection of complex traits in Arabidopsis.Theor. Appl. Genet.104: 1173–1184. Google Scholar
Ma X.F., Wanous M.K., Houchins K., Rodrguez mila M.A., Goicoechea P.G., Wang Z., Xie M., Gustafson J.P.2001. Molecular linkage mapping in rye (Secale cereale L.).Theor. Appl. Genet.102: 517–523. Google Scholar
Matsuoka Y., Mitchell S.E., Kresovich S., Goodman M. and Doebley J.2002. Microsatellite in _Zea_-variability, patterns of mutations, and use for evolutionary studies.Theor. Appl. Genet.104: 436–450. Google Scholar
Morgante M., Hanafey M. and Powell W.2002. Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes.Nat. Genet.30: 194–200. Google Scholar
Peng J.H., Fahima T., Röder M.S., Li Y.C., Dahan A., Grama A., Ronin Y.I., Korol A.B. and Nevo E.1999. Microsatellite tagging of the stripe-rust resistance gene YrH52 derived from wild emmer wheat, Triticum dicoccoides, and suggestive negative crossover interference on chromosome 1B.Theor. Appl. Genet.98: 862–872. Google Scholar
Reddy P.S. and Housman D.E.1997. The complex pathology of trinucleotide repeats.Curr. Opin. Cell. Biol.9: 364–372. Google Scholar
Röder M.S., Korzun V., Wendehake K., Plaschke J., Tixier M.H., Leroy P. and Ganal M.W.1998. A microsatellite map of wheat.Genetics149: 2007–2023. Google Scholar
Stack S., Campbell L., Henderson K., Eujayl I., Hanafey M., Powell W. and Wolters P.2000. Development of EST-derived microsatellite markers for mapping and germplasm analysis in wheat.Plant & Animal Genome conference, San Diego, California, USA. pp. 102. Google Scholar
Stephenson P., Bryan G., Kirby J., Collins A., Devos K., Busso C. and Gale M.1998. Fifty new microsatellite loci for the wheat genetic map.Theor. Appl. Genet.97: 946–949. Google Scholar
Temnykh S., DeClerck G., Lukashova A., Lipovich L., Cartinhour S. and McCouch S.2001. Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon association, and genetic marker potential.Genome Res.11: 1441–1452. Google Scholar
Tóth G., Gáspári Z. and Jurka J.2000. Microsatellites in different eukaryotic genomes: Survey and analysis.Genome Res10: 967–981. Google Scholar
Warren S.T. and Nelson D.L.1993. Trinucleotide repeat expansions in neurological disease.Curr. Opin. Neurobiol.3: 757–759. Google Scholar
Wooster R., Cleton-Jansen A.M., Collins N., Mangion J., Cornelis R.S., Cooper C.S., Gusterson B.A., Ponder B.A.J., von Deimling A., Wiestler O.D., et al.1994. Instability of short tandem repeats (microsatellites) in human cancer.Nat. Genet6: 152–156. Google Scholar
Xie C.J., Sun Q.X., Ni Z.F., Yang T.M., Nevo E. and Fahima T.2002. Chromosomal location of a Triticum dicoccoides-derived powdery mildew resistance gene in common wheat by using microsatellite markers.Theor. Appl. Genet.104: 1164–1172. Google Scholar