The Arabidopsis splicing factor SR1 is regulated by alternative splicing (original) (raw)
References
Ausubel, F.M., Brent, R., Kingston, R.E., Moore, D.D., Seidman, J.G., Smith, J.A. and Struhl, K. 1990. Current Protocols in Molecular Biology, Green & Wiley Interscience, New York. Google Scholar
Bournay, A.S., Hedley, P.E., Maddison, A., Waugh, R. and Machray, G.C. 1996. Exon skipping induced by cold stress in a potato invertase gene transcript. Nucl. Acid Res. 24: 2347–2351. Google Scholar
Brown, J.W.S. 1996. Arabidopsis intron mutations and pre-mRNA splicing. Plant J. 10: 771–780. Google Scholar
Caceres, J.F. and Krainer, A.R. 1993. Functional analysis of premRNA splicing factor SF2/ASF structural domains. EMBO J. 12: 4715–4726. Google Scholar
Church, G.M. and Kieffer-Higgins, S. 1988. Multiplex DNA sequencing. Science 240: 185–188. Google Scholar
Fu, X.D. 1995. The superfamily of arginine/serine rich splicing factors. RNA, 1: 663–680. Google Scholar
Gallie, D.R. and Bailey-Serres, J. 1997. Eyes off transcription! The wonderful world of post-transcriptional regulation. Plant Cell 9: 667–673. Google Scholar
Ge, H., Zuo, P. and Manley, J.L. 1991. Primary structure of the human splicing factor ASF reveals similarities with Drosophila regulators. Cell 66: 373–382. Google Scholar
Golovkin, M. and Reddy, A.S.N. 1996. Structure and expression of a plant U1snRNP 70K gene: alternative splicing of U1 snRNP 70K pre-mRNAs produces two different transcripts. Plant Cell 8: 1421–1435. Google Scholar
Grabowski, P.J. 1998. Splicing regulation in neurons: tinkering with cell-specific control. Cell 92: 709–712. Google Scholar
Grotewold, E., Prasanna, A. and Peterson, T. 1991. Alternatively spliced products of the maize P gene encode proteins with homology to the DNA binding domains of myb-like transcription factors. Proc. Natl. Acad. Sci. USA 88: 4587–4591. Google Scholar
Haber, D.A. 1997. Splicing into senescence: the curious case of p16 and p19ARF. Cell 91: 555–558. Google Scholar
Heinrichs, V. and Baker, B.S. 1997. In vivo analysis of the functional domains of the Drosophila splicing regulator RBP1. Proc. Natl. Acad. Sci. USA 94: 115–120. Google Scholar
Jumaa, H. and Nielsen, P.J. 1997. The splicing factor SRp20 modifies splicing of its own mRNA and ASF/SF2 antagonizes this regulation. EMBO J. 16: 5077–5085. Google Scholar
Kim, Y.-J., Zuo, P., Manley, J.L. and Baker, S.B. 1992. A Drosophila RNA binding protein RBP1 is localized to transcriptionally active sites of chromosomes and shows a functional similarity to human splicing factor ASF/SF2. Genes Dev. 6: 2569–2579. Google Scholar
Kohtz, J.D., Jamison, S.F., Will, C.L., Zuo, P., Luhrmann, R., Garcia-Blanco, M.A. and Manley, J.L. 1994. Protein-protein interactions and 50 splice site recognition in mammalian mRNA precursors. Nature 368: 119–124. Google Scholar
Krainer, A.R., Mayeda, A., Kozak, D. and Binns, G. 1991. Functional expression of cloned human splicing factor SF2: Homology to RNA-binding proteins, U170K and Drosophila splicing regulators. Cell 66: 383–394. Google Scholar
Lazar, G., Schaal, T., Maniatis, T. and Goodman, H.M. 1995. Identification of a plant serine-arginine-rich protein similar to the mammalian splicing factor SF2/ASF. Proc. Natl. Acad. Sci. USA 92: 7672–7676. Google Scholar
Lopato, S., Waigmann, E. and Barta, A. 1996. Characterization of a novel arginine/serine-rich splicing factor in Arabidopsis. Plant Cell 8: 2255–2264. Google Scholar
Lopato, S., Kalyna, M., Dorner, S., Kobayashi, R., Krainer, A.R. and Barta, A. 1999. atSRp30, one of two SF2/ASF-like proteins from Arabidopsis thaliana, regulates splicing of specific plant genes. Genes Dev. 13: 987–1001. Google Scholar
Lynch, K.W. and Maniatis, T. 1995. Synergistic interactions between two distinct elements of a regulated splicing enhancer. Genes Dev. 9: 284–293. Google Scholar
Macknight, R., Bancroft, I., Page, T., Lister, C., Schmidt, R., Love, K., Westphal, L., Murphy, G., Sherson, S., Cobett, C. and Dean, C. 1997. FCA, a gene controlling flowering time in Arabidopsis, encodes a protein containing RNA-binding domains. Cell 89: 737–745. Google Scholar
Manley, J.L. and Tacke, R. 1996. SR proteins and splicing control. Genes Dev. 10: 1569–1579. Google Scholar
Mayeda, A., Zahler, A.M., Krainer, A.R. and Roth, M.B. 1992. Two members of a conserved family of nuclear phosphoproteins are involved in pre-mRNA splicing. Proc. Natl. Acad. Sci. USA 89: 1301–1304. Google Scholar
Mermoud, J.E., Cohen, P. and Lamond, A.I. 1994. Regulation of mammalian spliceosome assembly by a protein phosphorylation mechanism. EMBO J. 13: 5679–5688. Google Scholar
Minet, M., Dufour, M.-E. and Lacroute, F. 1992. Complementation of Saccharomyces cerevisiae auxotrophic mutants by Arabidopsis thaliana cDNAs. Plant J. 2: 417–422. Google Scholar
Roth, M.B., Zahler, A.M. and Stolk, J.A. 1991. A conserved family of nuclear phosphoprotein is localized to sites of polymerase II transcription. J. Cell. Biol. 115: 587–596. Google Scholar
Sablowski, R.W.M. and Meyerowitz, E.M. 1998. Temperaturesensitive splicing in the floral homeotic mutant apetala3-1. Plant Cell 10: 1453–1463. Google Scholar
Screaton, G.R., Cacertes, J.F., Mayeda, A., Bell, M.V., Plebanski, M., Jackson, D.G., Bell, J.L. and Krainer, A.R. 1995. Identifi-cation and characterization of three members of the human SR family of pre-mRNA splicing factors. EMBO J. 14: 4336–4349. Google Scholar
Sharp, P. and Burge, B.C. 1997. Classification of introns: U2-type or U12-type. Cell 91: 875–879. Google Scholar
Simpson, G.G. and Filipowicz, W. 1996. Splicing of precursors to mRNA in higher plants: mechanism, regulation and sub-nuclear organization of the spliceosomal machinery. Plant Mol. Biol. 32: 1–41. Google Scholar
Staknis, D. and Reed, R. 1994. SR proteins promote the first specific recognition of pre-mRNA and are present together with the U1 small nuclear ribonucleoprotein particle in a general splicing enhancer complex. Mol. Cell. Biol. 14: 7670–7682. Google Scholar
Staley, J.P. and Guthrie, C. 1998. Mechanical devices of the spliceosome: motors, clocks, springs and things. Cell 92: 315–326. Google Scholar
Sun, Q., Mayeda, A., Hampson, R.K., Krainer, A.R. and Rottman, F.M. 1993. General splicing factor SF2/A5F promotes alternative splicing by binding to an exonic splicing enhancer. Genes Dev. 7: 2598–2608. Google Scholar
Sureau, A. and Perbal, B. 1994. Several mRNAs with variable 30 untranslated regions an different stability encode the human PR264/SC35 splicing factor Proc. Natl. Acad. Sci. USA 91: 932–936. Google Scholar
Tacke, R. and Manley, J.L. 1995. The human splicing factors ASF/SF2 and SC35 possess different functionally significant RNA binding specificities. EMBO J. 14: 3540–3551. Google Scholar
Tacke, R., Boned, A. and Goridis, C. 1992. ASF alternative transcripts are highly conserved between mouse and man. Nucl. Acids Res. 20: 5482. Google Scholar
Tacke, R., Chen, Y. and Manley, J.L. 1997. Sequence-specific RNA binding by an SR protein requires RS domain phosphorylation: creation of an SRp40-specific splicing enhancer. Proc. Natl. Acad. Sci. USA 94: 1148–1153. Google Scholar
Wu, J.Y. and Maniatis, T. 1993. Specific interactions between proteins implicated in splice site selection and regulated alternative splicing. Cell 75: 1061–1070. Google Scholar
Xia, S.-H. and Manley, J.L. 1997. Phosphorylation of the ASF/SF2 RS domain affects both protein-protein and protein-RNA interactions and is necessary for splicing. Genes Dev. 11: 334–344. Google Scholar
Zhang, W.J. and Wu, J.Y. 1996. Functional properties of p54, a novel SR protein active in constitutive and alternative splicing. Mol. Cell. Biol. 16: 5400–5408. Google Scholar
Zuo, P. and Manley, J.M. 1993. Functional domains of the human splicing factor ASF/SF2. EMBO J. 12: 47727–4737. Google Scholar