CDK-related protein kinases in plants (original) (raw)
References
Andrews, B. and Measday, V. 1998. The cyclin family of budding yeast: abundant use of a good idea. Trends Genet. 14: 66–72. PubMed Google Scholar
Brotherton, D.H., Dhanaraj, V., Wick, S., Brizuela, L., Domaille, P.J., Volyanik, E., Xu, X., Parisini, E., Smith, B.O., Archer, S.J., Serrano, M., Brenner, S.L., Blundell, T.L. and Laue, E.D. 1998. Crystal structure of the complex of the cyclin D dependent kinase Cdk6 bound to the cell-cycle inhibitor p19(INK4d). Nature 395: 244–250. PubMed Google Scholar
Burssens, S., Van Montagu, M. and Inzé, D. 1998. The cell cycle in Arabidopsis. Plant Physiol. Biochem. 36: 9–19. Google Scholar
Coenen, C. and Lomax, T.L. 1997. Auxin-cytokinin interactions in higher plants: old problems and new tools. Trends Plant Sci. 2: 351–356. ArticlePubMed Google Scholar
Colasanti, J., Tyers, M. and Sundaresan, V. 1991. Identification and characterization of cDNA clones encoding a functional p34cdc2 homologue from Zea mays. Proc. Natl. Acad. Sci. USA 88: 3377–3381. PubMed Google Scholar
DeBondt, H.L., Rosenblatt, J., Jancarik, J., Jones, H.D., Morgan, D.O. and Kim, S.H. 1993. Crystal structure of cyclin-dependent kinase 2. Nature 363: 595–602. PubMed Google Scholar
Defalco, G. and Giordano, A. 1998. CDK9 (PITALRE): a multifunctional cdc2-related kinase. J. Cell Physiol. 177: 501–506. PubMed Google Scholar
Deveylder, L., Segers, G., Glab, N., Casteels, P., Van Montagu, M. and Inzé, D. 1997. The Arabidopsis Cks1At protein binds the cyclin-dependent kinases Cdc2aAt and Cdc2bAt. FEBS Lett. 412: 446–452. PubMed Google Scholar
Deveylder, L., Segers, G., Glab, N., Van Montagu, M. and Inzé, D. 1997. Identification of proteins interacting with the Arabidopsis Cdc2aAt protein. J. Exp. Bot. 48: 2113–2114. Google Scholar
Ducommun, B., Brambilla, P., Felix, M. A., Franza, B., Karsenti, E. and Draetta, G. 1991. cdc2 phosphorylation is required for its interaction with cyclin. EMBO J. 10: 3311–3319. PubMed Google Scholar
Dudits, D., Magyar, Z., Deak, M., Meszaros, T., Miskolczi, P., Feher, A., Brown, S., Kondorosi, E., Athanasiadis, A., Pongor, S., Bako, L., Koncz, C. and Gyorgyey, J. 1998. Cyclin-dependent and calcium-dependent kinase families: response of cell division cycle to hormone and stress signals. In: D. Francis, D. Dudits and D. Inzé, (Eds.) Plant Cell Division, Portland Press, London/Miami, pp. 21–45. Google Scholar
Dynlacht, B.D. 1997. Regulation of transcription by proteins that control the cell cycle. Nature 389: 149–152. PubMed Google Scholar
Espinoza, F.H., Farrell, A., Erdjument-Bromage, H., Tempst, P. and Morgan, D.O. 1996. A cyclin-dependent kinase-activating kinase (CAK) in budding yeast unrelated to vertebrate CAK. Science 273: 1714–1717. PubMed Google Scholar
Feiler, H. and Jacobs, T. 1991. Cloning of the pea cdc2 homologue by efficient immunological screening of PCR products. Plant Mol. Biol. 17: 321–333. PubMed Google Scholar
Ferreira, P.C.G., Hemerly, A.S., Villaroel, R., Van Montagu, M. and Inzé, D. 1991. The Arabidopsis functional homolog of the p34cdc2 protein kinase. Plant Cell 3: 531–540. PubMed Google Scholar
Fobert, P.R., Gaudin, V., Lunness, P., Coen, E.S. and Doonan, J.H. 1996. Distinct classes of cdc2-related genes are differentially expressed during the cell division cycle in plants. Plant Cell 8: 1465–1476. PubMed Google Scholar
Fowler, J.E. and Quatrano, R.S. 1997. Plant cell morphogenesis: plasma membrane interactions with the cytoskeleton and cell wall. Annu. Rev. Cell. Dev. Biol. 13: 697–743. PubMed Google Scholar
Francis, D. and Halford, N.G. 1995. The plant cell cycle. Physiol. Plant. 93: 365–374. Google Scholar
Goldsmith, E.J. and Cobb, M.H. 1994. Protein kinases. Curr. Opin. Struct. Biol. 4: 833–840. PubMed Google Scholar
Grafi, G., Burnett, R.J., Helentjaris, T., Larkins, B.A., Decaprio, J.A., Sellers, W.R. and Kaelin, W.G. 1996. A maize cDNA encoding a member of the retinoblastoma protein family: involvement in endoreduplication. Proc. Natl. Acad. Sci. USA 93: 8962–8967. Google Scholar
Hanks, S.K., Quinn, A.M. and Hunter, T. 1988 The protein kinase family: conserved features and deduced phylogeny of the catalytic domains. Science 241: 42–52. PubMed Google Scholar
Harper, J.W. and Elledge, S.J. 1998. The role of Cdk7 in CAK function, a retro-retrospective. Genes Dev. 12: 285–289. PubMed Google Scholar
Hashimoto, J., Hirabayashi, T., Hayano, Y., Hata, S., Ohashi, Y., Suzuka I, Utsugi, T., Toh-E, A. and Kikuchi, Y. 1992. Isolation and characterization of cDNA clones encoding cdc2 homologues from Oryza sativa: a functional homologue and cognate variants. Mol. Gen. Genet. 12: 865–876. Google Scholar
Hata, S. 1991. cDNA cloning of a novel cdc2+/CDC28-related protein kinase from rice. FEBS Lett. 279: 149–152. PubMed Google Scholar
Hata, S., Kouchi, H., Suzuka, I. and Ishii, T. 1991. Isolation and characterization of cDNA clones for plant cyclins. EMBO J. 10: 2681–2688. PubMed Google Scholar
Heese, M., Mayer, U. and Jurgens, G. 1998. Cytokinesis in flowering plants: cellular process and developmental integration. Curr. Opin. Plant Biol. 1: 486–491. PubMed Google Scholar
Hemerly, A., Bergounioux, C., Van Montagu, M., Inzé, D. and Ferreira, P. 1992. Genes regulating the plant cell cycle: isolation of a mitotic-like cyclin from Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 89: 3295–3299. PubMed Google Scholar
Hemerly, A.S., Ferreira, P.J.E., Van Montagu, M., Engler, G. and Inzé, D. 1993. cdc2a expression in Arabidopsis is linked with the competence for cell division. Plant Cell 5: 1711–1723. ArticlePubMed Google Scholar
Hirt, H., Pay, A., Bogre, L., Meskiene, I. and Heberle-Bors, E. 1993. cdc2MsB, a cognate cdc2 gene from alfalfa, complements the G1/S but not the G2/M transition of budding yeast cdc28 mutants. Plant J. 4: 61–69. PubMed Google Scholar
Hirt, H., Pay, A., Gyorgyev, J., Bako, L., Nemeth, K., Bogre, L., Schweyen, R. J., Heberle-Bors, E. and Dudits, D. 1991. Complementation of a yeast cell cycle mutant by an alfalfa cDNA encoding a protein kinase homologous to p34cdc2. Proc. Natl. Acad. Sci. USA 88: 1636–1640. PubMed Google Scholar
Hong, Z., Miao, G. and Verma, D. 1993. p34cdc2 protein kinase homolog from mothbean (Vigna aconitifolia). Plant Physiol. 101: 1399–1400. PubMed Google Scholar
Hunter, T. and Plowman, G.D. 1997. The protein kinases of budding yeast: six score and more. Science 22: 18–22. Google Scholar
Imajuku, Y., Hirayama, T., Endoh, H. and Oka, A. 1992. Exonintron organization of the Arabidopsis thaliana protein kinase genes CDC2a and CDC2b. FEBS Lett. 304: 73–77. Google Scholar
Jeffrey, P.D., Russo, A.A., Polyak, K., Gibbs, E., Hurwitz, J., Massagué, J. and Pavletich, N.P. 1995. Mechanism of cdk activation revealed by the structure of a cyclinA-CDK2 complex. Nature 376: 313–320. PubMed Google Scholar
Joubès, J., Phan, T.H., Just, D., Rothan, C., Bergounioux, C., Raymond, P. and Chevalier, C. 1999. Molecular and biochemical characterization of the involvement of cyclin-dependent kinase A during the early development of tomato fruit. Plant Physiol. 121: 857–869. Google Scholar
Kaldis, P. 1999. The cdk-activating kinase (CAK): from yeast to mammals. Cell 55: 284–296. Google Scholar
Kidou, S., Umeda, M. and Uchimiya, H. 1992. Nucleotide sequence of rice (Oryza sativa L.) cDNA homologous to cdc2 gene. DNA Seq. 5: 125–129. Google Scholar
Kvarnheden, A., Tandre, K. and Engstrom, P. 1995. A cdc2 homologue and closely related processed retropseudogenes from Norway spruce. Plant Mol. Biol 27: 391–403. PubMed Google Scholar
Kvarnheden, A., Albert, V.A. and Engstrom, P. 1998. Molecular evolution of cdc2 pseudogenes in spruce (Picea). Plant Mol. Biol. 36: 767–774. PubMed Google Scholar
Lapidot-Lifson, Y., Patinkin, D., Prody, C.A., Ehrlich, G., Seidman, S., Ben-Aziz, R., Benseler, F., Eckstein, F., Zakut, H. and Soreq, H. 1992. Cloning and antisense oligodeoxynucleotide inhibition of a human homolog of cdc2 required in hematopoiesis. Proc. Natl. Acad. Sci. USA 89: 579–583. PubMed Google Scholar
Lenburg, M.E. and Oshea, E.K. 1996. Signaling phosphate starvation. Trends Biochem. Sci. 21: 383–387. PubMed Google Scholar
Logemann, E., Wu, S.C., Schroder, J., Schmelzer, E., Somssich, I.E. and Hahlbrock, K. 1995. Gene activation by UV light, fungal elicitor or fungal infection in Petroselinum crispum is correlated with repression of cell cycle-related genes. Plant J. 8: 865–876. PubMed Google Scholar
Lorbiecke, R. and Sauter, M. 1999. Adventitious root growth and cell-cycle induction in deepwater rice. Plant Physiol. 119: 21–29. PubMed Google Scholar
Magyar, Z., Meszaros, T., Miskolczi, P., Deak, M., Feher, A., Brown, S., Kondorosi, E., Athanasiadis, A., Pongor, S., Bilgin, M., Bako, L., Koncz, C. and Dudits, D. 1997. Cell cycle phase specificity of putative cyclin-dependent kinase variants in synchronized alfalfa cells. Plant Cell 9: 223–235. ArticlePubMed Google Scholar
Martinez, M.C., Jorgensen, J.E., Lawton, M.A., Lamb, C.J. and Doerner, P.W. 1992. Spatial pattern of cdc2 expression in relation to meristem activity and cell proliferation during plant development. Proc. Natl. Acad. Sci. USA 89: 7360–7364. PubMed Google Scholar
Mendenhall, M.D. and Hodge, A.E. 1998. Regulation of cdc28 cyclin-dependent protein kinase activity during the cell cycle of the yeast Saccharomyces cerevisiae. Microbiol. Mol. Biol. Rev. 62: 1191–1243. PubMed Google Scholar
Meyerowitz, E.M. 1997. Genetic control of cell division patterns in developing plants. Cell 88: 299–308. ArticlePubMed Google Scholar
Meyerson, M., Enders, G.H., Wu, C.L., Su, L.K., Gorka, C., Nelson, C., Harlow, E. and Tsai, L.H. 1992. A family of human cdc2-related protein kinases. EMBO J. 11: 2909–2917. PubMed Google Scholar
Miao, G., Hong, Z. and Verma, D. 1991. Two functional soybean genes encoding p34cdc2 protein kinases are regulated by different plant developmental pathways. Proc. Natl. Acad. Sci. USA 90: 943–947. Google Scholar
Michaelis, C. and Weeks, G. 1992. Isolation and characterization of a cdc2 cDNA from Dictyostelium discoideum. Biochim. Biophys. Acta 1132: 35–42. PubMed Google Scholar
Mironov, V., Deveylder, L., Van Montagu, M. and Inzé, D. 1999. Cyclin-dependent kinases and cell division in plants: the nexus. Plant Cell 11: 509–521. PubMed Google Scholar
Morgan, D.O. 1997. Cyclin-dependent kinases: engines, clocks, and microprocessors. Annu. Rev. Cell. Dev. Biol. 13: 261–291. PubMed Google Scholar
Nakagami, H., Sekine, M., Murakami, H. and Shinmyo, A. 1999. Tobacco retinoblastoma-related protein phosphorylated by a distinct cyclin-dependent kinase complex with Cdc2/cyclin D in vitro. Plant J. 18: 243–252. PubMed Google Scholar
Newman, T., de Bruijn, F.J., Green, P., Keegstra, K., Kende, H., McIntosh, L., Ohlrogge, J., Raikhel, N., Somerville, S., Thomashow, M., Retzel, E. and Somerville, C. 1994. Genes galore: a summary of methods for accessing results from large-scale partial sequencing of anonymous Arabidopsis cDNA clones. Plant Physiol. 106: 1241–1255. PubMed Google Scholar
Nigg, E.A. 1995. Cyclin-dependent protein kinases: key regulators of the eukaryotic cell cycle. Bioessays 17: 471–480. PubMed Google Scholar
Norbury, C. and Nurse, P. 1992. Animal cell cycles and their control. Annu. Rev. Biochem. 61: 441–470. PubMed Google Scholar
Porat, R., Lu, P.Z. and Oneill, S.D. 1998. Arabidopsis SKP1, a homologue of a cell cycle regulator gene, is predominantly expressed in meristematic cells. Planta 204: 345–351. PubMed Google Scholar
Price, C.A., Reardon, E.M. and Lonsdale, D.M. 1996. A guide to naming sequenced plant genes. Plant Mol. Biol. 30: 225–227. PubMed Google Scholar
Renaudin, J.P., Doonan, J.H., Freeman, D., Hashimoto, J., Hirt, H., Inzé, D., Jacobs, T., Kouchi, H., Rouze, P., Sauter, M., Savoure, A., Sorrell, D. A., Sundaresan, V. and Murray, J.A.H. 1996. Plant cyclins: a unified nomenclature for plant A-, B-and D-type cyclins based on sequence organization. Plant Mol. Biol. 32: 1003–1018. PubMed Google Scholar
Rickert, P., Seghezzi, W., Shanahan, F., Cho, H. and Lees, E. 1996. Cyclin C/CDK8 is a novel CTD kinase associated with RNA polymerase II. Oncogene 12: 2631–2640. PubMed Google Scholar
Russo, A.A., Jeffrey, P.D., Patten, A.K., Massague, J. and Pavletich, N.P. 1996a. Crystal structure of the p27(Kip1) cyclin-dependentkinase inhibitor bound to the cyclin A Cdk2 complex. Nature 382: 325–331. ArticlePubMed Google Scholar
Russo, A.A., Jeffrey, P.D. and Pavletich, N.P. 1996b. Structural basis of cyclin-dependent kinase activation by phosphorylation. Nature Struct. Biol. 3: 696–700. PubMed Google Scholar
Russo, A.A., Tong, L., Lee, J.O., Jeffrey, P.D. and Pavletich, N.P. 1998. Structural basis for inhibition of the cyclin-dependent kinase Cdk6 by the tumour suppressor p16(INK4a). Nature 395: 237–243. PubMed Google Scholar
Sauter, M. 1997. Differential expression of a CAK (cdc2-activating kinase)-like protein kinase, cyclins and cdc2 genes from rice during the cell cycle and in response to gibberellin. Plant J. 11: 181–190. PubMed Google Scholar
Segers, G., Gadisseur, I., Bergounioux, C., Engler, J.D., Jacqmard, A., Van Montagu, M. and Inzé, D. 1996. The Arabidopsis cyclin-dependent kinase gene cdc2bAt is preferentially expressed during S and G(2) phases of the cell cycle. Plant J. 10: 601–612. PubMed Google Scholar
Serizawa, H., Makela, T.P., Conaway, J.W., Conaway, R.C., Weinberg, R.A. and Young, R.A. 1995. Association of CDKactivating kinase subunits with transcription factor TFIIH. Nature 374: 280–282. PubMed Google Scholar
Setiady, Y.Y., Sekine, M., Hariguchi, N., Kouchi, H. and Shinmyo, A. 1996. Molecular cloning and characterization of a cDNA clone that encodes a Cdc2 homolog from Nicotiana tabacum. Plant Cell Physiol. 37: 369–376. PubMed Google Scholar
Shaul, O., Van Montagu, M. and Inzé, D. 1996. Regulation of cell division in Arabidopsis. Crit. Rev. Plant Sci. 15: 97–112. Google Scholar
Shimizu, S. and Mori, H. 1998. Analysis of cycles of dormancy and growth in pea axillary buds based on mRNA accumulation patterns of cell cycle-related genes. Plant Cell Physiol. 39: 255–262. PubMed Google Scholar
Soni, R., Carmichael, J.P., Shah, Z.H. and Murray, J.A.H. 1995. A family of cyclin D homologs from plants differentially controlled by growth regulators and containing the conserved retinoblastoma protein interaction motif. Plant Cell 7: 85–103. ArticlePubMed Google Scholar
Sopory, S.K. and Munshi, M. 1998. Protein kinases and phosphatases and their role in cellular signaling in plants. Crit. Rev. Plant Sci. 17: 245–318. Google Scholar
Sorrell, D.A., Combettes, B., Chaubet-Gigot, N., Gigot, C. and Murray, J.A.H. 1999. Distinct cyclin D genes show mitotic accumulation or constant levels of transcripts in tobacco bright yellow-2 cells. Plant Physiol. 119: 343–351. ArticlePubMed Google Scholar
Sun, Y.J., Dilkes, B.P., Zhang, C.S., Dante, R.A., Carneiro, N.P., Lowe, K.S., Jung, R., Gordon-Kamm, W.J. and Larkins, B.A. 1999. Characterization of maize (Zea mays L.) Wee1 and its activity in developing endosperm. Proc. Natl. Acad. Sci. USA 96: 4180–4185. PubMed Google Scholar
Tassan, J.P., Jaquenoud, M., Leopold, P., Schultz, S.J. and Nigg, E.A. 1995. Identification of human cyclin-dependent kinase 8, a putative protein kinase partner for cyclin C. Proc. Natl. Acad. Sci. USA 92: 8871–8875. PubMed Google Scholar
Thuret, J.Y., Valay, J.G., Faye, G. and Mann, C. 1996. Civ1 (CAK in vivo), a novel Cdk-activating kinase. Cell 86: 565–576. PubMed Google Scholar
Trehin, C., Planchais, S., Glab, N., Perennes, C., Tregear, J. and Bergounioux, C. 1998. Cell cycle regulation by plant growth regulators: involvement of auxin and cytokinin in the re-entry of Petunia protoplasts into the cell cycle. Planta 206: 215–224. PubMed Google Scholar
Umeda, M., Bhalerao, R.P., Schell, J., Uchimiya, H. and Koncz, C. 1998. A distinct cyclin-dependent kinase-activating kinase of Arabidopsis thaliana. Proc. Natl. Acad. Sci. USA 95: 5021–5026. PubMed Google Scholar
Umeda, M., Umedahara, C., Yamaguchi, M., Hashimoto, J. and Uchimiya, H. 1999. Differential expression of genes for cyclindependent protein kinases in rice plants. Plant Physiol. 119: 31–40. PubMed Google Scholar
Wang, H., Fowke, L.C. and Crosby, W.L. 1997. A plant cyclindependent kinase inhibitor gene. Nature 386: 451–452. ArticlePubMed Google Scholar
Wang, H., Qi, Q.G., Schorr, P., Cutler, A.J., Crosby, W.L. and Fowke, L.C. 1998. ICK1, a cyclin-dependent protein kinase inhibitor from Arabidopsis thaliana interacts with both Cdc2a and CycD3, and its expression is induced by abscisic acid. Plant J. 15: 501–510. PubMed Google Scholar
Xie, Q., Sanzburgos, P., Hannon, G. J. and Gutierrez, C. 1996. Plant cells contain a novel member of the retinoblastoma family of growth regulatory proteins. EMBO J. 15: 4900–4908. PubMed Google Scholar
Yamaguchi, M., Umeda, M. and Uchimiya, H. 1998. A rice homolog of Cdk7/MO15 phosphorylates both cyclin-dependent protein kinases and the carboxy-terminal domain of RNA polymerase II. Plant J. 16: 613–619. ArticlePubMed Google Scholar