Expression and phylogeny of the multiple antenna genes of the low-light-adapted strain Prochlorococcus marinus SS120 (Oxyphotobacteria) (original) (raw)
References
Burnap, R.L., Troyan, T. and Sherman, L.A. 1993. The highly abundant chlorophyll-protein complex of iron-deficient Synechococcus sp. PCC7942 (CP43′ ) is encoded by the isiA gene. Plant Physiol. 103: 893–902. PubMed Google Scholar
Campbell, L. and Vaulot., D. 1993. Photosynthetic picoplankton community structure in the subtropical North Pacific Ocean near Hawaii (station ALOHA). Deep-Sea Res. 40: 2043–2060. Google Scholar
Chisholm, S.W., Frankel, S.L., Goericke, R., Olson, R.J., Palenik, B., Waterbury, J.B., West-Johnsrud, L. and Zettler, E.R. 1992. Prochlorococcus marinus nov. gen. nov. sp.: an oxyphototrophic marine prokaryote containing divinyl-chlorophyll a; and b.Arch. Microbiol. 157: 297–300. Google Scholar
Church, G.M. and Gilbert, W. 1984. Genomic sequencing. Proc. Natl. Acad. Sci. USA 81: 1991–1995. PubMed Google Scholar
Dayhoff, M.O., Schwartz, R.M. and Orcutt, B.C. 1978. A model of evolutionary change in proteins. In: M.O. Dayhoff (Ed.) Atlas of Protein Sequence and Structure, Natural Biomedical Research Foundation, pp. 345–352.
Durnford, D.G., Deane, J.A., Tan, S., McFadden, G.I., Gantt, E. and Green, B.R. 1999. A phylogenetic assessment of the eukaryotic light-harvesting antenna proteins, with implications for plastid evolution. J. Mol. Evol. 48: 59–68. PubMed Google Scholar
Felsenstein, J. 1993. PHYLIP (Phylogeny Inference Package). version 3.5c. University of Washington, Seattle, WA. Google Scholar
Ferris, M.J. and Palenik, B. 1998. Niche adaptation in ocean cyanobacteria. Nature 396: 226–228. Google Scholar
Franche, C. and Damerval., T. 1988. Test on nif probes and DNA hybridization. Meth. Enzymol. 167: 803–808. Google Scholar
Garczarek, L., Hess, W.R., Holtzendorff, J., van der Staay, G.W.M. and Partensky, F. 2000. Multiplication of antenna genes as a major adaptation to low light in a marine prokaryote. Proc. Natl. Acad. Sci. USA 97: 4098–4101. PubMed Google Scholar
Garczarek, L., Partensky, F., Holtzendorff, J., Horst, W., Babin, M., Mary, I., Thomas, J.-C. and Hess, W.R. 2001. Differen-tial expression of antenna and core genes in Prochlorococcus PCC9511 (Oxyphotobacteria) grown under light-dark cycles. Envir. Microbiol., in press.
Green, B.R. and Durnford, D.G. 1996. The chlorophyll-carotenoid proteins of oxygenic photosynthesis. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 685-714. Google Scholar
Green, B.R., Pichersky, E. and Kloppstech, K. 1991. Chlorophyll _a/_b-binding proteins: an extended family. Trends Biochem. Sci. 16: 181–186. PubMed Google Scholar
Hess, W.R., Partensky, F., van der Staay, G.W.M., Garcia-Fernandez, J.M., Börner, T. and Vaulot, D. 1996. Coexistence of phycoerythrin and a chlorophyll a/b antenna in a marine prokaryote. Proc. Natl. Acad. Sci. USA 93: 11126–11130. PubMed Google Scholar
Hess, W.R., Fingerhut, C. and Schon, A. 1998. RNase P RNA from _Prochlorococcus marinu_s: contribution of substrate domains to recognition by a cyanobacterial ribozyme. FEBS Lett. 431: 138–142. PubMed Google Scholar
Hess, W.R., Steglich, C., Lichtlé, C. and Partensky, F. 1999. Phycoerythrins of the oxyphotobacterium Prochlorococcus marinus are associated to the thylakoid membrane and are encoded by a single large gene cluster. Plant Mol. Biol. 40: 507–521. Google Scholar
LaRoche, J., van der Staay, G.W.M., Partensky, F., Ducret, A., Aebersold, R., Li, R., Golden, S.S., Hiller, R.G., Wrench, P.M., Larkum, A.W. and Green, B. R. 1996. Independent evolution of the prochlorophyte and green plant chlorophyll a/b light-harvesting proteins. Proc. Natl. Acad. Sci. USA 93: 15244–15248. PubMed Google Scholar
Leonhardt, K. and Straus, N.A. 1993. Photosystem II genes isiA, psbDI and psbC in Anabaena sp. PCC 7120: cloning, sequencing and the transcriptional regulation in iron-stressed and iron-repleted cells. Plant Mol. Biol. 24: 63–73. Google Scholar
Marie, D., Brussaard, C., Partensky, F. and Vaulot, D. 1999. Flow cytometric analysis of phytoplankton, bacteria and viruses. In: J.P. Robinson (Ed.) Current Protocols in Cytometry, Interna-tional Society of Analytical Cytology/John Wiley, New York, pp. 11.11.11–11.11.15. Google Scholar
Moore, L.R. and Chisholm, S.W. 1999. Photophysiology of the marine cyanobacterium _Prochlorococcu_s: ecotypic differences among cultured isolates. Limnol. Oceanogr. 44: 628–638. Google Scholar
Moore, L.R., Goericke, R. and Chisholm, S.W. 1995. Comparative physiology of Synechococcus and _Prochlorococcu_s: influence of light and temperature on growth, pigments, fluorescence and absorptive properties. Mar. Ecol.-Prog. Ser.116: 259–275. Google Scholar
Moore, L.R., Rocap, G. and Chisholm, S.W. 1998. Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes. Nature 393: 464–467. Google Scholar
Nikolaitchik, O.A. and Bullerjahn, G.S. 1998. Transcript analysis of the pcbABC genes encoding the antenna apoproteins in the photosynthetic prokaryote, Prochlorothrix hollandica.FEMS Microbiol. Lett. 168: 187–194. PubMed Google Scholar
Palenik, B. and Haselkorn, R. 1992. Multiple evolutionary origins of prochlorophytes, the chlorophyll _b_-containing prokaryotes. Nature 355: 265–267. Google Scholar
Partensky, F., LaRoche, J., Wyman, K. and Falkowski, P.G. 1997. The divinyl-chlorophyll _a/_b-protein complexes of two strains of the oxyphototrophic marine prokaryote Prochlorococcus: characterization and response to changes in growth irradiance. Photosynth. Res. 51: 209–222. Google Scholar
Partensky, F., Blanchot, J. and Vaulot, D. 1999a. Differential distribution and ecology of Prochlorococcus and Synechococcus in oceanic waters: a review. In: L. Charpy and A.W.D. Larkum (Eds.) Marine Cyanobacteria, Musée Océanographique, Monaco, pp. 457–475. Google Scholar
Partensky, F., Hess, W.R. and Vaulot, D. 1999b. Prochlorococcus,a marine photosynthetic prokaryote of global significance. Microb. Mol. Biol. Rev. 63: 106–127. Google Scholar
Penno, S., Campbell, L. and Hess, W.R. 2000a. Presence of phycoerythrin in two strains of Prochlorococcus isolated from the sub-tropical North Pacific Ocean. J. Phycol. 36: 723–729. Google Scholar
Penno, S., Lamerdin, J.E., Larimer, F.W. and Hess, W.R. 2000b. Comparative genomics in marine cyanobacteria: evolution of the phycoerythrin gene cluster in Prochlorococcus. Proceedings of the Genomes 2000 Conference, Paris.
Pinevich, A.V., Averina, S.G. and Velichko, N.V. 1997. Another view on the role of photosynthetic pigments in taxonomy of oxygenic-phototrophic bacteria: proposed rejection of the order Prochlorales Florenzano, Balloni, and Materassi 1986 (Emend. Burger-Wiersma, Stal, and Mur 1989), the family Prochloraceae Florenzano, Balloni, and Materassi 1986, and the family Prochlorotrichaceae Burger-Wiersma, Stal, and Mur 1989. Int. J. Syst. Bacteriol. 47: 1264–1267. Google Scholar
Rippka, R., Coursin, T., Hess, W.R., Lichtlé, C., Scanlan, D.J., Palinska, K.A., Iteman, I., Partensky, F., Tandeau de Marsac, N., Houmard, J. and Herdman, M. 2000. Prochlorococcus marinus Chisholm et al. 1992, subsp. nov. _pastori_s,strainPCC 9511, the first axenic chlorophyll a 2 /b 2-containing cyanobacterium (Oxyphotobacteria). Int. J. Syst. Evol. Microbiol. 50: 1833–1847. PubMed Google Scholar
Saitou, N. and Nei, M. 1987. The Neighbor-Joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406–425. PubMed Google Scholar
Scanlan, D.J., Hess, W.R., Partensky, F., Scanlan, J. and Vaulot, D. 1996. High degree of genetic variation in Prochlorococcus (Prochlorophyta) revealed by RFLP analysis. Eur. J. Phycol. 31: 1–9. Google Scholar
Schwartz, E., Shen, D., Aebersold, R., McGrath, J.M., Pichersky, E. and Green, B.R. 1991. Nucleotide sequence and chromosomal location of Cab11 and Cab12, the genes for the fourth polypep-tide of the photosystem I light-harvesting antenna (LHCI). FEBS Lett. 280: 229–234. PubMed Google Scholar
Shimada, A., Kanai, S. and Maruyama, T. 1995a. Partial sequence of ribulose-1,5-bisphosphate carboxylase/oxygenase and the phylogeny of Prochloron and Prochlorococcus (Prochlorales). J. Mol. Evol. 40: 671–677. PubMed Google Scholar
Shimada, A., Nishijima, M. and Maruyama, T. 1995b. Seasonal abundance of Prochlorococcus in Suruga Bay, Japan in 1992-1993. J. Oceanogr. 51: 289–300. Google Scholar
Shimada, A., Maruyama, T. and Miyachi, S. 1996. Vertical distributions and photosynthetic action spectra of two oceanic picophytoplankters, Prochlorococcus marinus and Synechococcus sp. Mar. Biol. 127: 15–23. Google Scholar
Smith, S.W., Overbeek, R., Woese, C.R. and Gilbert, W. 1994. The Genetic Data Environment: an expandable GUI for multiple sequence analysis. Comput. Appl. Biosci. 10: 671–675. PubMed Google Scholar
Ting, C., Rocap, G., King, J. and Chisholm, S.W. 1999. Characterization of phycoerythrin genes in the chlorophyll a 2 /b 2-containing procaryote, Prochlorococcus sp. MIT9303. In: G. Garab (Ed.) Photosynthesis: Mechanisms and Effects. Kluwer Academic Publishers, Dordrecht, Netherlands, pp. 225–228. Google Scholar
Urbach, E., and Chisholm, S.W. 1998. Genetic diversity in Prochlorococcus populations flow cytometrically sorted from the Sargasso Sea and Gulf Stream. Limnol. Oceanogr. 43: 1615–1630. Google Scholar
Urbach, E., Robertson, D.L. and Chisholm, S.W. 1992. Multiple evolutionary origins of prochlorophytes within the cyanobacterial radiation. Nature 355: 267–270. ArticlePubMed Google Scholar
Urbach, E., Scanlan, D.J., Distel, D.L., Waterbury, J.B. and Chisholm, S.W. 1998. Rapid diversification of marine picophytoplankton with dissimilar light-harvesting structures inferred from sequences of Prochlorococcus and Synechococcus (Cyanobacte-ria). J. Mol. Evol. 46: 188–201. PubMed Google Scholar
van der Staay, G.W.M., Moon-van der Staay, S.Y., Garczarek, L. and Partensky, F. 1998a. Characterization of the Photosystem I subunits PsaI and PsaL from two strains of the marine oxyphototrophic prokaryote _Prochlorococcu_s. Photosynth. Res. 57: 183–191. Google Scholar
van der Staay, G.W.M., Yurkova, N. and Green, B.R. 1998b. The 38 kDa chlorophyll a/b protein of the prokaryote Prochlorothrix hollandica is encoded by a divergent pcb gene. Plant Mol. Biol. 36: 709–716. Google Scholar