Crystal structure of an H/ACA box ribonucleoprotein particle (original) (raw)
References
Ofengand, J. Ribosomal RNA pseudouridines and pseudouridine synthases. FEBS Lett.514, 17–25 (2002) ArticleCAS Google Scholar
Kiss, T. Small nucleolar RNAs: an abundant group of noncoding RNAs with diverse cellular functions. Cell109, 145–148 (2002) ArticleCAS Google Scholar
Meier, U. T. The many facets of H/ACA ribonucleoproteins. Chromosoma114, 1–14 (2005) ArticleCAS Google Scholar
Torchet, C. et al. The complete set of H/ACA snoRNAs that guide rRNA pseudouridylations in Saccharomyces cerevisiae. RNA11, 928–938 (2005) ArticleCAS Google Scholar
Lestrade, L. & Weber, M. J. snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs. Nucleic Acids Res.34, D158–D162 (2006) ArticleCAS Google Scholar
Ganot, P., Bortolin, M. L. & Kiss, T. Site-specific pseudouridine formation in preribosomal RNA is guided by small nucleolar RNAs. Cell89, 799–809 (1997) ArticleCAS Google Scholar
Ni, J., Tien, A. L. & Fournier, M. J. Small nucleolar RNAs direct site-specific synthesis of pseudouridine in ribosomal RNA. Cell89, 565–573 (1997) ArticleCAS Google Scholar
Balakin, A. G., Smith, L. & Fournier, M. J. The RNA world of the nucleolus: two major families of small RNAs defined by different box elements with related functions. Cell86, 823–834 (1996) ArticleCAS Google Scholar
Ganot, P., Caizergues-Ferrer, M. & Kiss, T. The family of box ACA small nucleolar RNAs is defined by an evolutionarily conserved secondary structure and ubiquitous sequence elements essential for RNA accumulation. Genes Dev.11, 941–956 (1997) ArticleCAS Google Scholar
Rozhdestvensky, T. S. et al. Binding of L7Ae protein to the K-turn of archaeal snoRNAs: a shared RNA binding motif for C/D and H/ACA box snoRNAs in Archaea. Nucleic Acids Res.31, 869–877 (2003) ArticleCAS Google Scholar
Morrissey, J. P. & Tollervey, D. Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis. Mol. Cell. Biol.13, 2469–2477 (1993) ArticleCAS Google Scholar
Atzorn, V., Fragapane, P. & Kiss, T. U17/snR30 is a ubiquitous snoRNA with two conserved sequence motifs essential for 18S rRNA production. Mol. Cell. Biol.24, 1769–1778 (2004) ArticleCAS Google Scholar
Mitchell, J. R., Cheng, J. & Collins, K. A box H/ACA small nucleolar RNA-like domain at the human telomerase RNA 3′ end. Mol. Cell. Biol.19, 567–576 (1999) ArticleCAS Google Scholar
Girard, J. P. et al. GAR1 is an essential small nucleolar RNP protein required for pre-rRNA processing in yeast. EMBO J.11, 673–682 (1992) ArticleCAS Google Scholar
Bousquet-Antonelli, C., Henry, Y., G'elugne, J. P., Caizergues-Ferrer, M. & Kiss, T. A small nucleolar RNP protein is required for pseudouridylation of eukaryotic ribosomal RNAs. EMBO J.16, 4770–4776 (1997) ArticleCAS Google Scholar
Lafontaine, D. L., Bousquet-Antonelli, C., Henry, Y., Caizergues-Ferrer, M. & Tollervey, D. The box H + ACA snoRNAs carry Cbf5p, the putative rRNA pseudouridine synthase. Genes Dev.12, 527–537 (1998) ArticleCAS Google Scholar
Watkins, N. J. et al. Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure. RNA4, 1549–1568 (1998) ArticleCAS Google Scholar
Henras, A. et al. Nhp2p and Nop10p are essential for the function of H/ACA snoRNPs. EMBO J.17, 7078–7090 (1998) ArticleCAS Google Scholar
Baker, D. L. et al. RNA-guided RNA modification: functional organization of the archaeal H/ACA RNP. Genes Dev.19, 1238–1248 (2005) ArticleCAS Google Scholar
Charpentier, B., Muller, S. & Branlant, C. Reconstitution of archaeal H/ACA small ribonucleoprotein complexes active in pseudouridylation. Nucleic Acids Res.33, 3133–3144 (2005) ArticleCAS Google Scholar
Wang, C. & Meier, U. T. Architecture and assembly of mammalian H/ACA small nucleolar and telomerase ribonucleoproteins. EMBO J.23, 1857–1867 (2004) ArticleCAS Google Scholar
Henras, A. K., Capeyrou, R., Henry, Y. & Caizergues-Ferrer, M. Cbf5p, the putative pseudouridine synthase of H/ACA-type snoRNPs, can form a complex with Gar1p and Nop10p in absence of Nhp2p and box H/ACA snoRNAs. RNA10, 1704–1712 (2004) ArticleCAS Google Scholar
Rashid, R. et al. Crystal structure of a Cbf5–Nop10–Gar1 complex and implications in RNA-guided pseudouridylation and dyskeratosis congenita. Mol. Cell21, 249–260 (2006) ArticleCAS Google Scholar
Hamma, T., Reichow, S. L., Varani, G. & Ferre-D'Amare, A. R. The Cbf5–Nop10 complex is a molecular bracket that organizes box H/ACA RNPs. Nature Struct. Mol. Biol.12, 1101–1107 (2005) ArticleCAS Google Scholar
Manival, X. et al. Crystal structure determination and site-directed mutagenesis of the Pyrococcus abyssi aCBF5–aNOP10 complex reveal crucial roles of the C-terminal domains of both proteins in H/ACA sRNP activity. Nucleic Acids Res.34, 826–839 (2006) ArticleCAS Google Scholar
Girard, J. P., Bagni, C., Caizergues-Ferrer, M., Amalric, F. & Lapeyre, B. Identification of a segment of the small nucleolar ribonucleoprotein-associated protein GAR1 that is sufficient for nucleolar accumulation. J. Biol. Chem.269, 18499–18506 (1994) CASPubMed Google Scholar
Ishitani, R. et al. Alternative tertiary structure of tRNA for recognition by a posttranscriptional modification enzyme. Cell113, 383–394 (2003) ArticleCAS Google Scholar
Liang, X. H. et al. A genome-wide analysis of C/D and H/ACA-like small nucleolar RNAs in Trypanosoma brucei reveals a trypanosome-specific pattern of rRNA modification. RNA11, 619–645 (2005) ArticleCAS Google Scholar
Russell, A. G., Schnare, M. N. & Gray, M. W. Pseudouridine-guide RNAs and other Cbf5p-associated RNAs in Euglena gracilis. RNA10, 1034–1046 (2004) ArticleCAS Google Scholar
Heiss, N. S. et al. X-linked dyskeratosis congenita is caused by mutations in a highly conserved gene with putative nucleolar functions. Nature Genet.19, 32–38 (1998) ArticleCAS Google Scholar
Marrone, A., Walne, A. & Dokal, I. Dyskeratosis congenita: telomerase, telomeres and anticipation. Curr. Opin. Genet. Dev.15, 249–257 (2005) ArticleCAS Google Scholar
Hoang, C. & Ferre-D'Amare, A. R. Cocrystal structure of a tRNA Psi55 pseudouridine synthase: nucleotide flipping by an RNA-modifying enzyme. Cell107, 929–939 (2001) ArticleCAS Google Scholar
Pan, H., Agarwalla, S., Moustakas, D. T., Finer-Moore, J. & Stroud, R. M. Structure of tRNA pseudouridine synthase TruB and its RNA complex: RNA recognition through a combination of rigid docking and induced fit. Proc. Natl Acad. Sci. USA100, 12648–12653 (2003) ArticleADSCAS Google Scholar
DeLano, W. L. The PyMOL User's Manual (Delano Scientific, San Carlos, California, 2002) Google Scholar