Distinct catalytic and non-catalytic roles of ARGONAUTE4 in RNA-directed DNA methylation (original) (raw)
References
Chan, S. W., Henderson, I. R. & Jacobsen, S. E. Gardening the genome: DNA methylation in Arabidopsis thaliana. Nature Rev. Genet.6, 351–360 (2005) ArticleCAS Google Scholar
Matzke, M. A. & Birchler, J. A. RNAi-mediated pathways in the nucleus. Nature Rev. Genet.6, 24–35 (2005) ArticleCAS Google Scholar
Xie, Z. et al. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol.2, e104 (2004) Article Google Scholar
Zilberman, D., Cao, X. & Jacobsen, S. E. ARGONAUTE4 control of locus-specific siRNA accumulation and DNA and histone methylation. Science299, 716–719 (2003) ArticleADSCAS Google Scholar
Chan, S. W. et al. RNA silencing genes control de novo DNA methylation. Science303, 1336 (2004) ArticleCAS Google Scholar
Zilberman, D. et al. Role of Arabidopsis ARGONAUTE4 in RNA-directed DNA methylation triggered by inverted repeats. Curr. Biol.14, 1214–1220 (2004) ArticleCAS Google Scholar
Herr, A. J., Jensen, M. B., Dalmay, T. & Baulcombe, D. C. RNA polymerase IV directs silencing of endogenous DNA. Science308, 118–120 (2005) ArticleADSCAS Google Scholar
Onodera, Y. et al. Plant nuclear RNA polymerase IV mediates siRNA and DNA methylation-dependent heterochromatin formation. Cell120, 613–622 (2005) ArticleCAS Google Scholar
Li, C. et al. An ARGONAUTE4-containing nuclear processing center colocalized with Cajal bodies in Arabidopsis thaliana. Cell126, 93–106 (2006) ArticleCAS Google Scholar
Lippman, Z., May, B., Yordan, C., Singer, T. & Martienssen, R. Distinct mechanisms determine transposon inheritance and methylation via small interfering RNA and histone modification. PLoS Biol.1, e67 (2003) Article Google Scholar
Rohila, J. S., Chen, M., Cerny, R. & Fromm, M. E. Improved tandem affinity purification tag and methods for isolation of protein heterocomplexes from plants. Plant J.38, 172–181 (2004) ArticleCAS Google Scholar
Qi, Y., Denli, A. M. & Hannon, G. J. Biochemical specialization within Arabidopsis RNA silencing pathways. Mol. Cell19, 421–428 (2005) ArticleCAS Google Scholar
Baumberger, N. & Baulcombe, D. C. Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs. Proc. Natl Acad. Sci. USA102, 11928–11933 (2005) ArticleADSCAS Google Scholar
Hamilton, A., Voinnet, O., Chappell, L. & Baulcombe, D. Two classes of short interfering RNA in RNA silencing. EMBO J.21, 4671–4679 (2002) ArticleCAS Google Scholar
Singer, T., Yordan, C. & Martienssen, R. A. Robertson’s Mutator transposons in A.thaliana are regulated by the chromatin-remodeling gene Decrease in DNA Methylation (DDM1). Genes Dev.15, 591–602 (2001) ArticleCAS Google Scholar
Cao, X. & Jacobsen, S. E. Locus-specific control of asymmetric and CpNpG methylation by the DRM and CMT3 methyltransferase genes. Proc. Natl Acad. Sci. USA99, (Suppl. 4)16491–16498 (2002) ArticleADSCAS Google Scholar
Girard, A., Sachidanandam, R., Hannon, G. & Carmell, M. A germline-specific class of small RNAs binds mammalian Piwi proteins. Nature442, 199–202 (2006) ArticleADS Google Scholar
Jurka, J. et al. Repbase Update, a database of eukaryotic repetitive elements. Cytogenet. Genome Res.110, 462–467 (2005) ArticleCAS Google Scholar
Vaucheret, H., Vazquez, F., Crete, P. & Bartel, D. P. The action of ARGONAUTE1 in the miRNA pathway and its regulation by the miRNA pathway are crucial for plant development. Genes Dev.18, 1187–1197 (2004) ArticleCAS Google Scholar
Grewal, S. I. & Moazed, D. Heterochromatin and epigenetic control of gene expression. Science301, 798–802 (2003) ArticleADSCAS Google Scholar
Bao, N., Lye, K. W. & Barton, M. K. MicroRNA binding sites in Arabidopsis class III HD-ZIP mRNAs are required for methylation of the template chromosome. Dev. Cell7, 653–662 (2004) ArticleCAS Google Scholar
Qi, Y. & Hannon, G. J. Uncovering RNAi mechanisms in plants: biochemistry enters the foray. FEBS Lett.579, 5899–5903 (2005) ArticleCAS Google Scholar
Liu, J. et al. Argonaute2 is the catalytic engine of mammalian RNAi. Science305, 1437–1441 (2004) ArticleADSCAS Google Scholar
Rivas, F. V. et al. Purified Argonaute2 and an siRNA form recombinant human RISC. Nature Struct. Mol. Biol.12, 340–349 (2005) ArticleCAS Google Scholar
Jacobsen, S. & Meyerowitz, E. Hypermethylated SUPERMAN epigenetic alleles in Arabidopsis. Science277, 1100–1103 (1997) ArticleCAS Google Scholar
Allen, E., Xie, Z., Gustafson, A. M. & Carrington, J. C. MicroRNA-directed phasing during _trans_-acting siRNA biogenesis in plants. Cell121, 207–221 (2005) ArticleCAS Google Scholar
Clough, S. J. & Bent, A. F. Floral dip: a simplified method for _Agrobacterium_-mediated transformation of Arabidopsis thaliana. Plant J.16, 735–743 (1998) ArticleCAS Google Scholar