Ravasz, E., Somera, A. L., Mongru, D. A., Oltvai, Z. N. & Barabási, A.-L. Hierarchical organization of modularity in metabolic networks. Science30, 1551–1555 (2002) ArticleADS Google Scholar
Clauset, A., Newman, M. E. J. & Moore, C. Finding community structure in very large networks. Phys. Rev. E70, 066111 (2004) ArticleADS Google Scholar
Guimera, R. & Amaral, L. A. N. Functional cartography of complex metabolic networks. Nature433, 895–900 (2005) ArticleADSCAS Google Scholar
Lagomarsino, M. C., Jona, P., Bassetti, B. & Isambert, H. Hierarchy and feedback in the evolution of the Escherichia coli transcription network. Proc. Natl Acad. Sci. USA104, 5516–5520 (2001) Article Google Scholar
Liben-Nowell, D. & Kleinberg, J. M. The link-prediction problem for social networks. J. Am. Soc. Inform. Sci. Technol.58, 1019–1031 (2007) Article Google Scholar
Girvan, M. & Newman, M. E. J. Community structure in social and biological networks. Proc. Natl Acad. Sci. USA99, 7821–7826 (2002) ArticleADSMathSciNetCAS Google Scholar
Krause, A. E., Frank, K. A., Mason, D. M., Ulanowicz, R. E. & Taylor, W. W. Compartments revealed in food-web structure. Nature426, 282–285 (2003) ArticleADSCAS Google Scholar
Radicchi, F., Castellano, C., Cecconi, F., Loreto, V. & Parisi, D. Defining and identifying communities in networks. Proc. Natl Acad. Sci. USA101, 2658–2663 (2004) ArticleADSCAS Google Scholar
Watts, D. J., Dodds, P. S. & Newman, M. E. J. Identity and search in social networks. Science296, 1302–1305 (2002) ArticleADSCAS Google Scholar
Kleinberg, J. in Proc. 2001 Neural Inform. Processing Systems Conf. (eds Dietterich, T. G., Becker, S. & Ghahramani, Z.) 431–438 (MIT Press, Cambridge, MA, 2002) Google Scholar
Palla, G., Derényi, I., Farkas, I. & Vicsek, T. Uncovering the overlapping community structure of complex networks in nature and society. Nature435, 814–818 (2005) ArticleADSCAS Google Scholar
Casella, G. & Berger, R. L. Statistical Inference (Duxbury, Belmont, 2001) MATH Google Scholar
Newman, M. E. J. & Barkema, G. T. Monte Carlo Methods in Statistical Physics (Clarendon, Oxford, 1999) MATH Google Scholar
Huss, M. & Holme, P. Currency and commodity metabolites: Their identification and relation to the modularity of metabolic networks. IET Syst. Biol.1, 280–285 (2007) ArticleCAS Google Scholar
Krebs, V. Mapping networks of terrorist cells. Connections24, 43–52 (2002) Google Scholar
Dawah, H. A., Hawkins, B. A. & Claridge, M. F. Structure of the parasitoid communities of grass-feeding chalcid wasps. J. Anim. Ecol.64, 708–720 (1995) Article Google Scholar
Bryant, D. in BioConsensus (eds Janowitz, M., Lapointe, F.-J., McMorris, F. R., Mirkin, B. & Roberts, F.) pp. 163–184 (Series in Discrete Mathematics and Theoretical Computer Science, Vol. 61, American Mathematical Society-DIMACS, Providence, RI, 2003) Book Google Scholar
Dunne, J. A., Williams, R. J. & Martinez, N. D. Food-web structure and network theroy: The role of connectance and size. Proc. Natl Acad. Sci. USA99, 12917–12922 (2002) ArticleADSCAS Google Scholar
Szilágyi, A., Grimm, V., Arakaki, A. K. & Skolnick, J. Prediction of physical protein–protein interactions. Phys. Biol.2, S1–S16 (2005) ArticleADS Google Scholar
Sprinzak, E., Sattath, S. & Margalit, H. How reliable are experimental protein-protein interaction data? J. Mol. Biol.327, 919–923 (2003) ArticleCAS Google Scholar
Ito, T. et al. A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl Acad. Sci. USA98, 4569–4574 (2001) ArticleADSCAS Google Scholar
Lakhina, A., Byers, J. W., Crovella, M. & Xie, P. in INFOCOM 2003: Twenty-Second Annual Joint Conf. IEEE Computer and Communications Societies (ed. Bauer, F.) Vol. 1 332–341 (IEEE, Piscataway, New Jersey, 2003) Google Scholar
Clauset, A. & Moore, C. Accuracy and scaling phenomena in Internet mapping. Phys. Rev. Lett.94, 018701 (2005) ArticleADS Google Scholar
Martinez, N. D., Hawkins, B. A., Dawah, H. A. & Feifarek, B. P. Effects of sampling effort on characterization of food-web structure. Ecology80, 1044–1055 (1999) Article Google Scholar
Hanely, J. A. & McNeil, B. J. The meaning and use of the area under a receiver operating characteristic (ROC) curve. Radiology143, 29–36 (1982) Article Google Scholar
Sales-Pardo, M., Guimerá, R., Moreira, A. A. & Amaral, L. A. N. Extracting the hierarchical organization of complex systems. Proc. Natl Acad. Sci. USA104, 15224–15229 (2007) ArticleADSCAS Google Scholar