Regulation of heterochromatic DNA replication by histone H3 lysine 27 methyltransferases (original) (raw)

References

  1. Arias, E. E. & Walter, J. C. Strength in numbers: preventing rereplication via multiple mechanisms in eukaryotic cells. Genes Dev. 21, 497–518 (2007)
    Article CAS Google Scholar
  2. Jacob, Y. et al. ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nature Struct. Mol. Biol. 16, 763–768 (2009)
    Article CAS Google Scholar
  3. Raynaud, C. et al. Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis. Plant J. 47, 395–407 (2006)
    Article CAS Google Scholar
  4. Jackson, J. P., Lindroth, A. M., Cao, X. & Jacobsen, S. E. Control of CpNpG DNA methylation by the KRYPTONITE histone H3 methyltransferase. Nature 416, 556–560 (2002)
    Article ADS CAS Google Scholar
  5. Malagnac, F., Bartee, L. & Bender, J. An Arabidopsis SET domain protein required for maintenance but not establishment of DNA methylation. EMBO J. 21, 6842–6852 (2002)
    Article CAS Google Scholar
  6. Bernatavichute, Y. V., Zhang, X., Cokus, S., Pellegrini, M. & Jacobsen, S. E. Genome-wide association of histone H3 lysine nine methylation with CHG DNA methylation in Arabidopsis thaliana. PLoS ONE 3, e3156 (2008)
    Article ADS Google Scholar
  7. Obayashi, T., Hayashi, S., Saeki, M., Ohta, H. & Kinoshita, K. ATTED-II provides coexpressed gene networks for Arabidopsis. Nucleic Acids Res. 37, D987–D991 (2009)
    Article CAS Google Scholar
  8. Moldovan, G. L., Pfander, B. & Jentsch, S. PCNA, the maestro of the replication fork. Cell 129, 665–679 (2007)
    Article CAS Google Scholar
  9. Galbraith, D. W., Harkins, K. R. & Knapp, S. Systemic endopolyploidy in Arabidopsis thaliana. Plant Physiol. 96, 985–989 (1991)
    Article CAS Google Scholar
  10. Caro, E., Desvoyes, B., Ramirez-Parra, E., Sanchez, M. P. & Gutierrez, C. Endoreduplication control during plant development. SEB Exp. Biol. Ser. 59, 167–187 (2008)
    CAS PubMed Google Scholar
  11. Jeddeloh, J. A., Stokes, T. L. & Richards, E. J. Maintenance of genomic methylation requires a SWI2/SNF2-like protein. Nature Genet. 22, 94–97 (1999)
    Article CAS Google Scholar
  12. Fransz, P., ten Hoopen, R. & Tessadori, F. Composition and formation of heterochromatin in Arabidopsis thaliana. Chromosome Res. 14, 71–82 (2006)
    Article CAS Google Scholar
  13. Soppe, W. J. et al. DNA methylation controls histone H3 lysine 9 methylation and heterochromatin assembly in Arabidopsis. EMBO J. 21, 6549–6559 (2002)
    Article CAS Google Scholar
  14. Pauler, F. M. et al. H3K27me3 forms BLOCs over silent genes and intergenic regions and specifies a histone banding pattern on a mouse autosomal chromosome. Genome Res. 19, 221–233 (2009)
    Article CAS Google Scholar
  15. Gomez, M. Controlled rereplication at DNA replication origins. Cell Cycle 7, 1313–1314 (2008)
    Article CAS Google Scholar
  16. Fuchs, J., Demidov, D., Houben, A. & Schubert, I. Chromosomal histone modification patterns—from conservation to diversity. Trends Plant Sci. 11, 199–208 (2006)
    Article CAS Google Scholar
  17. Lindroth, A. M. et al. Dual histone H3 methylation marks at lysines 9 and 27 required for interaction with CHROMOMETHYLASE3. EMBO J. 23, 4146–4155 (2004)
    Article Google Scholar
  18. Mathieu, O., Probst, A. V. & Paszkowski, J. Distinct regulation of histone H3 methylation at lysines 27 and 9 by CpG methylation in Arabidopsis. EMBO J. 24, 2783–2791 (2005)
    Article CAS Google Scholar
  19. Musselman, C. A. & Kutateladze, T. G. PHD fingers: epigenetic effectors and potential drug targets. Mol. Interv. 9, 314–323 (2009)
    Article CAS Google Scholar
  20. Zhang, X., Bernatavichute, Y. V., Cokus, S., Pellegrini, M. & Jacobsen, S. E. Genome-wide analysis of mono-, di- and trimethylation of histone H3 lysine 4 in Arabidopsis thaliana. Genome Biol. 10, R62 (2009)
    Article Google Scholar
  21. Jiang, H. & Wong, W. H. SeqMap: mapping massive amount of oligonucleotides to the genome. Bioinformatics 24, 2395–2396 (2008)
    Article CAS Google Scholar
  22. Davidson, I. F., Li, A. & Blow, J. J. Deregulated replication licensing causes DNA fragmentation consistent with head-to-tail fork collision. Mol. Cell 24, 433–443 (2006)
    Article CAS Google Scholar
  23. Vongs, A., Kakutani, T., Martienssen, R. A. & Richards, E. J. Arabidopsis thaliana DNA methylation mutants. Science 260, 1926–1928 (1993)
    Article ADS CAS Google Scholar
  24. Lan, F. et al. Recognition of unmethylated histone H3 lysine 4 links BHC80 to LSD1-mediated gene repression. Nature 448, 718–722 (2007)
    Article ADS CAS Google Scholar
  25. Dillon, S. C., Zhang, X., Trievel, R. C. & Cheng, X. The SET-domain protein superfamily: protein lysine methyltransferases. Genome Biol. 6, 227 (2005)
    Article Google Scholar
  26. Joshi, P. et al. Dominant alleles identify SET domain residues required for histone methyltransferase of Polycomb repressive complex 2. J. Biol. Chem. 283, 27757–27766 (2008)
    Article CAS Google Scholar
  27. Earley, K. W. et al. Gateway-compatible vectors for plant functional genomics and proteomics. Plant J. 45, 616–629 (2006)
    Article CAS Google Scholar
  28. Curtis, M. D. & Grossniklaus, U. A Gateway Cloning Vector Set for High-Throughput Functional Analysis of Genes in Planta[w]. Plant Physiol. 133, 462–469 (2003)
    Article CAS Google Scholar
  29. Shi, X. et al. ING2 PHD domain links histone H3 lysine 4 methylation to active gene repression. Nature 442, 96 (2006)
    Article ADS CAS Google Scholar

Download references