Independent evolution of striated muscles in cnidarians and bilaterians (original) (raw)

• Seipel, K. & Schmid, V. Evolution of striated muscle: jellyfish and the origin of triploblasty. Dev. Biol. 282, 14–26 (2005)
  Article CAS PubMed Google Scholar
• Schuchert, P., Reber-Müller, S. & Schmid, V. Life stage specific expression of a myosin heavy chain in the hydrozoan Podocoryne carnea . Differentiation 54, 11–18 (1993)
  Article CAS PubMed Google Scholar
• Chapman, D. M. in Coelenterate Biology (eds Muscatine, L. & Lenhoff, H. M. ) Ch. 1 1–93 (Academic, 1974)
  Book Google Scholar
• Burton, P. M. Inisghts from diploblasts; the evolution of mesoderm and muscle. J. Exp. Zool. 308B, 1–10 (2007)
  Article Google Scholar
• Schmidt-Rhaesa, A. The Evolution of Organ Systems 1st edn (Oxford Univ. Press, 2007)
  Book Google Scholar
• Mackie, G. O., Mills, C. E. & Singla, C. L. Structure and function of the prehensile tentilla of Euplokamis (Ctenophora, Cydippida). Zoomorphology 107, 319–337 (1988)
  Article Google Scholar
• Boelsterli, U. An electron microscopic study of early developmental stages, myogenesis, oogenesis, and cnidogenesis in the anthomedusa, Podocoryne carnea M. Sars. J. Morphol. 154, 259–289 (1977)
  Article CAS PubMed Google Scholar
• Squire, J. M., Al-Khayat, H. A., Knupp, C. & Luther, P. K. Molecular architecture in muscle contractile assemblies. Adv. Protein Chem. 71, 17–87 (2005)
  Article CAS PubMed Google Scholar
• Hooper, S. L., Hobbs, K. H. & Thuma, J. B. Invertebrate muscles: thin and thick filament structure; molecular basis of contraction and its regulation, catch and asynchronous muscle. Prog. Neurobiol. 86, 72–127 (2008)
  Article CAS PubMed PubMed Central Google Scholar
• Kamm, K. E. & Stull, J. T. Dedicated myosin light chain kinases with diverse cellular functions. J. Biol. Chem. 276, 4527–4530 (2001)
  Article CAS PubMed Google Scholar
• Korn, E. D. Coevolution of head, neck, and tail domains of myosin heavy chains. Proc. Natl Acad. Sci. USA 97, 12559–12564 (2000)
  Article ADS CAS PubMed PubMed Central Google Scholar
• Oota, S. & Saitou, N. Phylogenetic relationship of muscle tissues deduced from superimposition of gene trees. Mol. Biol. Evol. 16, 856–867 (1999)
  Article CAS PubMed Google Scholar
• Goodson, H. V. & Spudich, J. A. Molecular evolution of the myosin family: relationships derived from comparisons of amino acid sequences. Proc. Natl Acad. Sci. USA 90, 659–663 (1993)
  Article ADS CAS PubMed PubMed Central Google Scholar
• Vicente-Manzanares, M., Ma, X., Adelstein, R. S. & Horwitz, A. R. Non-muscle myosin II takes centre stage in cell adhesion and migration. Nature Rev. Mol. Cell Biol. 10, 778–790 (2009)
  Article CAS Google Scholar
• Hooper, S. L. & Thuma, J. B. Invertebrate muscles: muscle specific genes and proteins. Physiol. Rev. 85, 1001–1060 (2005)
  Article CAS PubMed Google Scholar
• Nickel, M., Scheer, C., Hammel, J. U., Herzen, J. & Beckmann, F. The contractile sponge epithelium _sensu lato_–body contraction of the demosponge Tethya wilhelma is mediated by the pinacoderm. J. Exp. Biol. 214, 1692–1698 (2011)
  Article PubMed Google Scholar
• Hammel, J. U. Zur Funktion des Wasserleitungssystems und der Entwicklung von Knospen in Schwämmen. Morphologische Grundlagen einer reversen Genetik. PhD thesis, Friedrich Schiller Univ. Jena. (2010)
• Adamska, M. et al. Structure and expression of conserved Wnt pathway components in the demosponge Amphimedon queenslandica . Evol. Dev. 12, 494–518 (2010)
  Article CAS PubMed Google Scholar
• Renfer, E., Amon-Hassenzahl, A., Steinmetz, P. R. & Technau, U. A muscle-specific transgenic reporter line of the sea anemone, Nematostella vectensis . Proc. Natl Acad. Sci. USA 107, 104–108 (2010)
  Article ADS CAS PubMed Google Scholar
• Rui, Y., Bai, J. & Perrimon, N. Sarcomere formation occurs by the assembly of multiple latent protein complexes. PLoS Genet. 6, e1001208 (2010)
  Article PubMed PubMed Central Google Scholar
• Sanger, J. M. & Sanger, J. W. The dynamic Z bands of striated muscle cells. Sci. Signal. 1, pe37 (2008)
  Article PubMed Google Scholar
• Clark, K. A., McElhinny, A. S., Beckerle, M. C. & Gregorio, C. C. Striated muscle cytoarchitecture: an intricate web of form and function. Annu. Rev. Cell Dev. Biol. 18, 637–706 (2002)
  Article CAS PubMed Google Scholar
• Frank, D., Kuhn, C., Katus, H. A. & Frey, N. The sarcomeric Z-disc: a nodal point in signalling and disease. J. Mol. Med. 84, 446–468 (2006)
  Article CAS PubMed Google Scholar
• Martindale, M. Q., Pang, K. & Finnerty, J. R. Investigating the origins of triploblasty: ‘mesodermal’ gene expression in a diploblastic animal, the sea anemone Nematostella vectensis (phylum Cnidaria; class Anthozoa). Development 131, 2463–2474 (2004)
  Article CAS PubMed Google Scholar
• Ayme-Southgate, A. J., Southgate, R. J., Philipp, R. A., Sotka, E. E. & Kramp, C. The myofibrillar protein, projectin, is highly conserved across insect evolution except for its PEVK domain. J. Mol. Evol. 67, 653–669 (2008)
  Article ADS CAS PubMed PubMed Central Google Scholar
• Kenny, P. A., Liston, E. M. & Higgins, D. G. Molecular evolution of immunoglobulin and fibronectin domains in titin and related muscle proteins. Gene 232, 11–23 (1999)
  Article CAS PubMed Google Scholar
• Sutter, S. B., Raeker, M. O., Borisov, A. B. & Russell, M. W. Orthologous relationship of obscurin and Unc-89: phylogeny of a novel family of tandem myosin light chain kinases. Dev. Genes Evol. 214, 352–359 (2004)
  Article CAS PubMed Google Scholar
• Craig, R. & Woodhead, J. L. Structure and function of myosin filaments. Curr. Opin. Struct. Biol. 16, 204–212 (2006)
  Article CAS PubMed Google Scholar
• Torruella, G. et al. Phylogenetic relationships within the Opisthokonta based on phylogenomic analyses of conserved single-copy protein domains. Mol. Biol. Evol. 29, 531–544 (2012)
  Article CAS PubMed Google Scholar
• Philippe, H. et al. Phylogenomics revives traditional views on deep animal relationships. Curr. Biol. 19, 706–712 (2009)
  Article CAS PubMed Google Scholar
• Fritzenwanker, J. H. & Technau, U. Induction of gametogenesis in the basal cnidarian Nematostella vectensis . Dev. Genes Evol. 212, 99–103 (2002)
  Article PubMed Google Scholar
• Chevalier, S., Martin, A., Leclere, L., Amiel, A. & Houliston, E. Polarised expression of FoxB and FoxQ2 genes during development of the hydrozoan Clytia hemisphaerica . Dev. Genes Evol. 216, 709–720 (2006)
  Article CAS PubMed Google Scholar
• Leys, S. P. & Degnan, B. M. Cytological basis of photoresponsive behavior in a sponge larva. Biol. Bull. 201, 323–338 (2001)
  Article CAS PubMed Google Scholar
• Sarà, M., Sarà, A., Nickel, M. & Brümmer, F. Three new species of Tethya (Porifera: Demospongiae) from German aquaria Stuttg. Beitr. Naturkd. A. 631, 1–15 (2001)
  Google Scholar
• Nickel, M. Kinetics and rhythm of body contractions in the sponge Tethya wilhelma (Porifera: Demospongiae). J. Exp. Biol. 207, 4515–4524 (2004)
  Article PubMed Google Scholar
• Putnam, N. H. et al. The amphioxus genome and the evolution of the chordate karyotype. Nature 453, 1064–1071 (2008)
  Article ADS CAS PubMed Google Scholar
• Putnam, N. H. et al. Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317, 86–94 (2007)
  Article ADS CAS PubMed Google Scholar
• Chapman, J. A. et al. The dynamic genome of Hydra . Nature 464, 592–596 (2010)
  Article ADS CAS PubMed PubMed Central Google Scholar
• Ryan, J. F. et al. The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa. Evodevo 1, 9 (2010)
  Article PubMed PubMed Central Google Scholar
• Srivastava, M. et al. The Trichoplax genome and the nature of placozoans. Nature 454, 955–960 (2008)
  Article ADS CAS PubMed Google Scholar
• Srivastava, M. et al. The Amphimedon queenslandica genome and the evolution of animal complexity. Nature 466, 720–726 (2010)
  Article ADS CAS PubMed PubMed Central Google Scholar
• King, N. et al. The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans. Nature 451, 783–788 (2008)
  Article ADS CAS PubMed PubMed Central Google Scholar
• Ruiz-Trillo, I. et al. The origins of multicellularity: a multi-taxon genome initiative. Trends Genet. 23, 113–118 (2007)
  Article CAS PubMed Google Scholar
• Merchant, S. S. et al. The Chlamydomonas genome reveals the evolution of key animal and plant functions. Science 318, 245–250 (2007)
  Article ADS CAS PubMed PubMed Central Google Scholar
• Banks, J. A. et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science 332, 960–963 (2011)
  Article ADS CAS PubMed PubMed Central Google Scholar
• Eichinger, L. et al. The genome of the social amoeba Dictyostelium discoideum . Nature 435, 43–57 (2005)
  Article ADS CAS PubMed PubMed Central Google Scholar
• Fritz-Laylin, L. K. et al. The genome of Naegleria gruberi illuminates early eukaryotic versatility. Cell 140, 631–642 (2010)
  Article CAS PubMed Google Scholar
• Fernandez-Fueyo, E. et al. Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis. Proc. Natl Acad. Sci. USA 109, 5458–5463 (2012)
  Article ADS CAS PubMed PubMed Central Google Scholar
• Wood, V. et al. The genome sequence of Schizosaccharomyces pombe . Nature 415, 871–880 (2002)
  Article ADS CAS PubMed Google Scholar
• Burge, C. & Karlin, S. Prediction of complete gene structures in human genomic DNA. J. Mol. Biol. 268, 78–94 (1997)
  Article CAS PubMed Google Scholar
• Shinzato, C. et al. Using the Acropora digitifera genome to understand coral responses to environmental change. Nature 476, 320–323 (2011)
  Article ADS CAS PubMed Google Scholar
• Hunter, S. et al. InterPro: the integrative protein signature database. Nucleic Acids Res. 37, D211–D215 (2009)
  Article CAS PubMed Google Scholar
• Finn, R. D. et al. The Pfam protein families database. Nucleic Acids Res. 38, D211–D222 (2009)
  Article PubMed PubMed Central Google Scholar
• Lupas, A., Van Dyke, M. & Stock, J. Predicting coiled coils from protein sequences. Science 252, 1162–1164 (1991)
  Article ADS CAS PubMed Google Scholar
• Edgar, R. C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res. 32, 1792–1797 (2004)
  Article CAS PubMed PubMed Central Google Scholar
• Castresana, J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol. Biol. Evol. 17, 540–552 (2000)
  Article CAS PubMed Google Scholar
• Abascal, F., Zardoya, R. & Posada, D. ProtTest: selection of best-fit models of protein evolution. Bioinformatics 21, 2104–2105 (2005)
  Article CAS PubMed Google Scholar
• Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. The Clustal_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 25, 4876–4882 (1997)
  Article CAS PubMed PubMed Central Google Scholar
• Guindon, S. et al. New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Syst. Biol. 59, 307–321 (2010)
  Article CAS PubMed Google Scholar
• Altekar, G., Dwarkadas, S., Huelsenbeck, J. P. & Ronquist, F. Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics 20, 407–415 (2004)
  Article CAS PubMed Google Scholar
• Ronquist, F. & Huelsenbeck, J. P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572–1574 (2003)
  Article CAS PubMed Google Scholar
• Genikhovich, G. & Technau, U. In situ hybridization of starlet sea anemone (Nematostella vectensis) embryos, larvae, and polyps. Cold Spring Harb. Protoc. 2009, pdb.prot5282 (2009)
  PubMed Google Scholar
• Larroux, C. et al. Developmental expression of transcription factor genes in a demosponge: insights into the origin of metazoan multicellularity. Evol. Dev. 8, 150–173 (2006)
  Article CAS PubMed Google Scholar
• Larroux, C. et al. Whole-mount In situ hybridization in Amphimedon . Cold Spring Harb. Protoc. 2008, pdb.prot5096 (2008)
  Article Google Scholar
• Hammel, J. U., Herzen, J., Beckmann, F. & Nickel, M. Sponge budding is a spatiotemporal morphological patterning process: insights from synchrotron radiation-based x-ray microtomography into the asexual reproduction of Tethya wilhelma . Front. Zool. 6, 19 (2009)
  Article PubMed PubMed Central Google Scholar
• Weissenfels, N. Scanning electron microscope histology of spongy Ephydatia fluviatilis . Microsc. Acta 85, 345–350 (1982)
  Google Scholar
• Nickel, M., Donath, T., Schweikert, M. & Beckmann, F. Functional morphology of Tethya species (Porifera): 1. Quantitative 3D-analysis of Tethya wilhelma by synchrotron radiation based X-ray microtomography. Zoomorphology 125, 209–223 (2006)
  Article Google Scholar